Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq908 132 7e-25 >seq908 Length=77775 Score = 132 bits (146), Expect = 7e-25 Identities = 235/339 (69%), Gaps = 13/339 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||| || || || ||||| ||||| ||| | || | Sbjct 44689 GATCTGGCAAATGTAC-AAGAAGGCCGAAGCTTCATTCTGGACTGCCGAAGAGATTGATC 44747 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| ||| | ||| |||||||| | ||| Sbjct 44748 TATCCAAGGATCTCCACG----ACTGGAACAACAAGCTCAACGATGACGAGCGTTACTTC 44803 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||||||||| ||| ||||| ||| || || || || ||||||||| Sbjct 44804 ATCTCCCACGTCCTCGC-TTTCTTCGCTGCCTCTGACGGGATTGTCAACGAGAACCTCCT 44862 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | | || |||||| | || ||||| || || || ||||| ||||| || Sbjct 44863 CGAGCGCTTCAGCAGTGAAGTCCAAATCCCCGAGGCCCGATTCTTCTACGGATTCCAAAT 44922 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || |||||||||||||| || ||||| ||||| ||||| ||||| ||| ||| Sbjct 44923 CATGATGGAGAACATCCACTCTGAGACATACTCCCTCCTCATCGATACCTATATCATGGA 44982 Query 1456068 CCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACAC 1456106 | | | ||| | ||||||| |||||||| || Sbjct 44983 GCAAGCACAAAAGACCTACCTCTTCAATGCCATCGAGAC 45021 Score = 93.3 bits (102), Expect = 6e-13 Identities = 175/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 1456524 TCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGC 1456583 ||||| |||||| || ||||| ||| ||||||| | | ||| | || || || | Sbjct 45353 TCATCACCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCAC 45412 Query 1456584 TCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCT 1456643 | ||||||||||||||| | || ||| || ||||||| | || ||||| || || || Sbjct 45413 TTCTCGGCATGAACGCCAAC-CTGATGAAGCAATACATTG-AGTTCGTCGCTGATCGTCT 45470 Query 1456644 GCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGG 1456703 ||| | |||||| |||||| ||| | |||||||| ||| | |||| Sbjct 45471 CCTCCTTTCCCTCGGC-AATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTTATGG 45529 Query 1456704 AGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACGCCA 1456762 || ||||| || | || ||||||||||| |||||| || || || || ||| | Sbjct 45530 AGAACATCTCCCTTGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTACCAAA 45589 Query 1456763 AGGCCGGCGTCA 1456774 |||||||||||| Sbjct 45590 AGGCCGGCGTCA 45601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177645881549668