Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1406 100 3e-16 seq861 84.2 2e-11 >seq1406 Length=252419 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||| ||||| || |||||||| || | || | ||| ||| Sbjct 214803 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTACGTCCGTCCTCG 214744 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| |||||||| |||||||| || || || || || || || || Sbjct 214743 AGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 214684 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| || | ||||||||||| ||||| || || || || || ||| Sbjct 214683 ATCTTGGACTTGACGTTATCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTA 214624 Query 134685 CCGGT 134689 ||||| Sbjct 214623 CCGGT 214619 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||| | || | |||||| || ||||||||||| || |||||||| | Sbjct 215104 CCACCACGGAGTCGGAGAACCAAGTGTAGAGTAGATTCCTTTTGGATATTGTAGTCCGAA 215045 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || || || ||||| || | | ||| || || || || Sbjct 215044 AGGGTGCGGCCGTCCTCAAGTTGCTTCCCAGCAAAGATAAGTCTCTGTTGGTCAGGTGGG 214985 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || |||||||| || ||||| ||| | || || || || || || Sbjct 214984 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGTATCCGAGGACTCAACC 214925 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 ||||| || ||||| || ||||| || || || || Sbjct 214924 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 214890 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||| |||||||| |||||||||||| | ||| | || || | || Sbjct 215308 TGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCCTCCAATTGC 215249 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 |||||||| ||||| | ||||| || || || || || || || || || ||||| || Sbjct 215248 TTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTGAATCTTC 215189 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || ||| | || || || || || || |||||||| || || || ||||| Sbjct 215188 GACTTCACATTGTCGATAGTATCTGAAGACTCAACCTCGAGAGTGATCGTCTTTCCGGTG 215129 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 215128 AGGGTCTTGACGAATATTTGCAT 215106 >seq861 Length=344942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| | || || || ||||| || || || || ||||| || ||||||||||| Sbjct 25581 TCCTCCACGTAGACGTAAGACGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGA 25522 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | ||| ||||| |||||||| || || || | || || ||||| || || Sbjct 25521 GAGGGTGCGGCCGTCTTCGAGTTGTTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGG 25462 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || || || || |||||| || | ||||| |||||| || Sbjct 25461 AATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTATCAATCGTGTCACTCGATTCGAC 25402 Query 134666 GTCGAGAGTAATGGTTTTACCGGT 134689 ||||| || || || || || || Sbjct 25401 CTCGAGGGTGATAGTCTTGCCCGT 25378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505387571839280