Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq843 246 4e-60 >seq843 Length=104768 Score = 246 bits (272), Expect = 4e-60 Identities = 1134/1776 (64%), Gaps = 35/1776 (2%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || || |||||||||| || || | | ||||| ||||||||||| || || || ||| Sbjct 64934 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 64875 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || || |||| || |||||||||||| || | || |||| || || Sbjct 64874 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATG 64815 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || || ||||| |||||| |||||| ||||| || || | || || ||||| | | Sbjct 64814 TGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACG 64755 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | ||| | || ||||||| ||||| ||| ||||||||| | || | | Sbjct 64754 ATGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGATG 64695 Query 68614 CTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | |||||| || ||||||||||| | || || ||||| || | || | Sbjct 64694 TTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGAC 64635 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || | | | || | | | | || || || || || | ||| ||||| ||| Sbjct 64634 CAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCCA 64575 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | | || | |||| ||| || || ||||||||| || | | || ||| ||| Sbjct 64574 GCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAAATCCA 64515 Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850 ||||||||| || || ||||||||||| || || | ||||| || | | ||| Sbjct 64514 AGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACCG 64455 Query 68851 TGTGTTATGAT-TTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATT 68909 ||| ||| | | ||| || | ||||||||||||||| | ||| ||| Sbjct 64454 TGTTGAGAGATCTGTTGCTTCAAGCT-AGCCCAATCCCAAAGATCGGTAGGTGTGACACC 64396 Query 68910 CCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGG 68969 ||| | || ||||| || || ||| ||| || || | ||| || ||||| || Sbjct 64395 CCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATGG 64336 Query 68970 TCC-TTCCTGTTCAGCTAGTTCA--CAACTTGCCTCTAATGCACCGTAATAAATTGTTTC 69026 || | | || | | | || || || || ||| ||| ||||| || || Sbjct 64335 ACCATGAATCTTTGCCAACTCCATGGAA---GCAGTCAAAGCAGCGTGGTAAATGGTCTC 64279 Query 69027 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAA 69085 |||||| | | ||||| | |||| || || | ||||| ||| | | | | | Sbjct 64278 GAAAATTTGGATGTTGAGGTGCTTG-GCCTCCGGGGATTCGAAAGGAAGACGAAGAGCCA 64220 Query 69086 TAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAAC 69145 || ||||| || | || ||||| || | | | |||||||| || | | ||| | Sbjct 64219 AGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGAC-GGAAATTGCTC 64161 Query 69146 TTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACT 69204 |||| || || |||| || || || || | ||| ||||| ||||| | || ||| Sbjct 64160 TTTCTTGCCTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTCTTGACG 64101 Query 69205 ACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA-AATCGTCCATC-TATAACAAACA 69262 || |||| || || | || || | || ||| || | | || | | | |||| Sbjct 64100 ACAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCATCAACA 64041 Query 69263 TA--TT--CAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA--- 69315 || || || || | ||||| | ||| ||||| || ||||||| | |||| Sbjct 64040 TAGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTG---GTGCACAG 63984 Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375 || | | || || || || | || | | ||| || || ||||| | || || Sbjct 63983 TACTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTG 63924 Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435 |||||| ||| || || ||||||||||| || || || | || || ||| | |||| Sbjct 63923 CTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCC 63864 Query 69436 TCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT---CTCT 69492 || | ||||| | ||||| | | | || | | | ||||| || ||| ||| Sbjct 63863 TCAAGGATAGAGTACCAAA-GCTTTTGGGCTT--TGATGCTCTTGCGACCCTTGCCCTCA 63807 Query 69493 TTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGA 69552 || |||| ||| | | |||||| || || || | ||||| |||| |||||| Sbjct 63806 GACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGA 63747 Query 69553 CATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGA 69612 || || || || |||||||||| ||| | || | | ||| || ||||| || ||| Sbjct 63746 CACTCGTTAGGGCACATCAATGTCCAGTCGAGATTCTTTTCAACACGCTTCATGAAGAGA 63687 Query 69613 TCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttt 69672 || |||||||| ||||| |||||||| | || | | || || ||||| || Sbjct 63686 TCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTC 63627 Query 69673 tttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATG 69732 ||| || ||||| ||||| | || ||| | |||||||| || || || || || | Sbjct 63626 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 63567 Query 69733 ACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTC 69792 | || || || || || || || ||||| | |||||||| ||||| || | ||||| Sbjct 63566 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTG 63507 Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG 69852 ||||| |||| || || || || || || || || || | |||||| || | || Sbjct 63506 AGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCA 63447 Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 || || | || | ||||| || || || || | || || || | || ||| Sbjct 63446 CGGATTCTGTGAACATTGAGACCGATACCACCAGCATTCTTTGAAATCATGGCGCAAATC 63387 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || ||||| || ||||| || ||||| || || |||||| | ||| || ||| Sbjct 63386 TTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGAT 63327 Query 69973 GACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCAT 70032 || | ||| ||| || || || || | || || || ||||| ||||| || Sbjct 63326 GAAAGTTGTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAAGTAT 63267 Query 70033 TTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCC 70091 || || | || ||||| || || || || | || |||||| ||| | |||||||| Sbjct 63266 TTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGAATTCC 63208 Query 70092 TATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 | ||| |||||||| | ||||||||| || ||||| Sbjct 63207 GACCGCAACACGCATAATCATATGCTGTGGACGTTC 63172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686894082978960