Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq843 246 4e-60
>seq843
Length=104768
Score = 246 bits (272), Expect = 4e-60
Identities = 1134/1776 (64%), Gaps = 35/1776 (2%)
Strand=Plus/Minus
Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433
|| || |||||||||| || || | | ||||| ||||||||||| || || || |||
Sbjct 64934 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 64875
Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493
|| || |||| || |||||||||||| || | || |||| || ||
Sbjct 64874 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATG 64815
Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553
|| || ||||| |||||| |||||| ||||| || || | || || ||||| | |
Sbjct 64814 TGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACG 64755
Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613
|| | ||| | || ||||||| ||||| ||| ||||||||| | || | |
Sbjct 64754 ATGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGATG 64695
Query 68614 CTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670
| | |||||| || ||||||||||| | || || ||||| || | || |
Sbjct 64694 TTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGAC 64635
Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730
|| | | | || | | | | || || || || || | ||| ||||| |||
Sbjct 64634 CAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCCA 64575
Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790
| | || | |||| ||| || || ||||||||| || | | || ||| |||
Sbjct 64574 GCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAAATCCA 64515
Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850
||||||||| || || ||||||||||| || || | ||||| || | | |||
Sbjct 64514 AGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACCG 64455
Query 68851 TGTGTTATGAT-TTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATT 68909
||| ||| | | ||| || | ||||||||||||||| | ||| |||
Sbjct 64454 TGTTGAGAGATCTGTTGCTTCAAGCT-AGCCCAATCCCAAAGATCGGTAGGTGTGACACC 64396
Query 68910 CCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGG 68969
||| | || ||||| || || ||| ||| || || | ||| || ||||| ||
Sbjct 64395 CCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATGG 64336
Query 68970 TCC-TTCCTGTTCAGCTAGTTCA--CAACTTGCCTCTAATGCACCGTAATAAATTGTTTC 69026
|| | | || | | | || || || || ||| ||| ||||| || ||
Sbjct 64335 ACCATGAATCTTTGCCAACTCCATGGAA---GCAGTCAAAGCAGCGTGGTAAATGGTCTC 64279
Query 69027 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAA 69085
|||||| | | ||||| | |||| || || | ||||| ||| | | | | |
Sbjct 64278 GAAAATTTGGATGTTGAGGTGCTTG-GCCTCCGGGGATTCGAAAGGAAGACGAAGAGCCA 64220
Query 69086 TAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAAC 69145
|| ||||| || | || ||||| || | | | |||||||| || | | ||| |
Sbjct 64219 AGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGAC-GGAAATTGCTC 64161
Query 69146 TTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACT 69204
|||| || || |||| || || || || | ||| ||||| ||||| | || |||
Sbjct 64160 TTTCTTGCCTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTCTTGACG 64101
Query 69205 ACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA-AATCGTCCATC-TATAACAAACA 69262
|| |||| || || | || || | || ||| || | | || | | | ||||
Sbjct 64100 ACAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCATCAACA 64041
Query 69263 TA--TT--CAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA--- 69315
|| || || || | ||||| | ||| ||||| || ||||||| | ||||
Sbjct 64040 TAGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTG---GTGCACAG 63984
Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375
|| | | || || || || | || | | ||| || || ||||| | || ||
Sbjct 63983 TACTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTG 63924
Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435
|||||| ||| || || ||||||||||| || || || | || || ||| | ||||
Sbjct 63923 CTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCC 63864
Query 69436 TCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT---CTCT 69492
|| | ||||| | ||||| | | | || | | | ||||| || ||| |||
Sbjct 63863 TCAAGGATAGAGTACCAAA-GCTTTTGGGCTT--TGATGCTCTTGCGACCCTTGCCCTCA 63807
Query 69493 TTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGA 69552
|| |||| ||| | | |||||| || || || | ||||| |||| ||||||
Sbjct 63806 GACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGA 63747
Query 69553 CATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGA 69612
|| || || || |||||||||| ||| | || | | ||| || ||||| || |||
Sbjct 63746 CACTCGTTAGGGCACATCAATGTCCAGTCGAGATTCTTTTCAACACGCTTCATGAAGAGA 63687
Query 69613 TCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttt 69672
|| |||||||| ||||| |||||||| | || | | || || ||||| ||
Sbjct 63686 TCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTC 63627
Query 69673 tttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATG 69732
||| || ||||| ||||| | || ||| | |||||||| || || || || || |
Sbjct 63626 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 63567
Query 69733 ACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTC 69792
| || || || || || || || ||||| | |||||||| ||||| || | |||||
Sbjct 63566 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTG 63507
Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG 69852
||||| |||| || || || || || || || || || | |||||| || | ||
Sbjct 63506 AGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCA 63447
Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912
|| || | || | ||||| || || || || | || || || | || |||
Sbjct 63446 CGGATTCTGTGAACATTGAGACCGATACCACCAGCATTCTTTGAAATCATGGCGCAAATC 63387
Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
|| || ||||| || ||||| || ||||| || || |||||| | ||| || |||
Sbjct 63386 TTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGAT 63327
Query 69973 GACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCAT 70032
|| | ||| ||| || || || || | || || || ||||| ||||| ||
Sbjct 63326 GAAAGTTGTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAAGTAT 63267
Query 70033 TTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCC 70091
|| || | || ||||| || || || || | || |||||| ||| | ||||||||
Sbjct 63266 TTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGAATTCC 63208
Query 70092 TATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127
| ||| |||||||| | ||||||||| || |||||
Sbjct 63207 GACCGCAACACGCATAATCATATGCTGTGGACGTTC 63172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686894082978960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |