Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq802 136 3e-27
>seq802
Length=118920
Score = 136 bits (150), Expect = 3e-27
Identities = 386/593 (65%), Gaps = 15/593 (3%)
Strand=Plus/Plus
Query 19234 GACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTG 19293
|| ||| |||||| |||||| || |||||| || || || || ||||| || |
Sbjct 16578 GATATGGGAATTGGTGGATTGGATACCGAGTTTAGTGCTATTTTCCGAAGAGCGTTCGCA 16637
Query 19294 TCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTT 19353
|| ||| |||| || | | | ||| | ||||||| | | ||||| || ||
Sbjct 16638 TCTCGTATTTTCCCTCCTGGATTGATTGAGAAATTGGGTATTCAGCATGTGAAGGGTATT 16697
Query 19354 TTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA--- 19410
||||| | ||| || || ||| || ||||| || ||||| | || | | ||
Sbjct 16698 TTGCTATTTGGACCTCCAGGTACCGGGAAAACTTTGATTGCTCGTCAAATCGGAAAGATG 16757
Query 19411 TTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTA 19470
||| | | | | |||| || || | || ||||| ||| ||||||||||||||||
Sbjct 16758 TTAAATTCGAGAGAACCA---AAGGTTATCAACGGTCCAGAAGTCTTAAATAAATATGTT 16814
Query 19471 GGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGT 19530
|| ||||| ||||| || | ||| | ||||| || || || |||| | ||
Sbjct 16815 GGACAATCTGAAGAGAACATCCGAAAACTCTTTGCGGATGCAGAGAAAGAGTACAAGGAG 16874
Query 19531 TTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAG 19590
||| | ||| | | || ||||| || | ||||| ||||| || |||| ||
Sbjct 16875 AAAGGAGATGAGAGTGGTCTTCATATTATCATTTTTGATGAGTTGGATGCCGTCTGCAAA 16934
Query 19591 CAAAGAGGTTC---------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTC 19641
|||||||| ||||| || ||| || ||||| |||||||||||||||
Sbjct 16935 CAAAGAGGGAGCGGAGCCGGTGGTGGAACTGGTGTTGGTGACAGTGTTGTCAATCAACTT 16994
Query 19642 CTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAAT 19701
|| || ||| | || |||||| | || || || ||||||||| | ||||| ||||| |||
Sbjct 16995 CTCTCCAAACTTGATGGTGTTGATCAGCTCAACAATATTTTACTCATTGGTATGACCAAT 17054
Query 19702 AGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAA 19761
| |||| | || || || ||| | || || || || |||||| | | || ||
Sbjct 17055 CGTATGGATATGATTGATGATGCTTTACTGCGTCCTGGACGTTTGGAAGTTCACATGGAG 17114
Query 19762 ATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATC 19814
|| |||| || || ||| || | ||||||| || || ||||| ||
Sbjct 17115 ATCTCGCTACCGGACGAGGCTGGTCGAGCCCAAATTTTGAAGATTCATACTTC 17167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397447697392570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |