Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq802 136 3e-27 >seq802 Length=118920 Score = 136 bits (150), Expect = 3e-27 Identities = 386/593 (65%), Gaps = 15/593 (3%) Strand=Plus/Plus Query 19234 GACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTG 19293 || ||| |||||| |||||| || |||||| || || || || ||||| || | Sbjct 16578 GATATGGGAATTGGTGGATTGGATACCGAGTTTAGTGCTATTTTCCGAAGAGCGTTCGCA 16637 Query 19294 TCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTT 19353 || ||| |||| || | | | ||| | ||||||| | | ||||| || || Sbjct 16638 TCTCGTATTTTCCCTCCTGGATTGATTGAGAAATTGGGTATTCAGCATGTGAAGGGTATT 16697 Query 19354 TTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA--- 19410 ||||| | ||| || || ||| || ||||| || ||||| | || | | || Sbjct 16698 TTGCTATTTGGACCTCCAGGTACCGGGAAAACTTTGATTGCTCGTCAAATCGGAAAGATG 16757 Query 19411 TTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTA 19470 ||| | | | | |||| || || | || ||||| ||| |||||||||||||||| Sbjct 16758 TTAAATTCGAGAGAACCA---AAGGTTATCAACGGTCCAGAAGTCTTAAATAAATATGTT 16814 Query 19471 GGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGT 19530 || ||||| ||||| || | ||| | ||||| || || || |||| | || Sbjct 16815 GGACAATCTGAAGAGAACATCCGAAAACTCTTTGCGGATGCAGAGAAAGAGTACAAGGAG 16874 Query 19531 TTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAG 19590 ||| | ||| | | || ||||| || | ||||| ||||| || |||| || Sbjct 16875 AAAGGAGATGAGAGTGGTCTTCATATTATCATTTTTGATGAGTTGGATGCCGTCTGCAAA 16934 Query 19591 CAAAGAGGTTC---------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTC 19641 |||||||| ||||| || ||| || ||||| ||||||||||||||| Sbjct 16935 CAAAGAGGGAGCGGAGCCGGTGGTGGAACTGGTGTTGGTGACAGTGTTGTCAATCAACTT 16994 Query 19642 CTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAAT 19701 || || ||| | || |||||| | || || || ||||||||| | ||||| ||||| ||| Sbjct 16995 CTCTCCAAACTTGATGGTGTTGATCAGCTCAACAATATTTTACTCATTGGTATGACCAAT 17054 Query 19702 AGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAA 19761 | |||| | || || || ||| | || || || || |||||| | | || || Sbjct 17055 CGTATGGATATGATTGATGATGCTTTACTGCGTCCTGGACGTTTGGAAGTTCACATGGAG 17114 Query 19762 ATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATC 19814 || |||| || || ||| || | ||||||| || || ||||| || Sbjct 17115 ATCTCGCTACCGGACGAGGCTGGTCGAGCCCAAATTTTGAAGATTCATACTTC 17167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447697392570