Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq843 264 1e-65
seq908 140 4e-28
seq927 111 2e-19
seq567 84.2 3e-11
>seq843
Length=104768
Score = 264 bits (292), Expect = 1e-65
Identities = 1180/1826 (65%), Gaps = 75/1826 (4%)
Strand=Plus/Minus
Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTAC-ATATGCATAGAAGA 110421
|||||||||||||| || |||||||| || | ||||| || | | | ||||||| |
Sbjct 64901 CGGAGATAGTACATTCCAGTCTTGAGACCCAGCTTCCA-GCCTGCGAAATGCATACTGGT 64843
Query 110422 GAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAA 110481
|| ||| ||| ||||| | |||| || |||||| |||| ||| ||||||||
Sbjct 64842 GATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAA 64783
Query 110482 -GCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCAT--CTTAATTTCCCAAACTGT 110538
|| || | || | || ||||| | | || | | | | | || |||||||| ||
Sbjct 64782 TGCACCACGGTCG-GCAGCCATCTGGACGA--TGGTACGTTGCGAGATCTCCCAAACGGT 64726
Query 110539 GCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGC 110598
|| ||| |||||||||| | ||||| | || | ||| ||||| || || ||
Sbjct 64725 CTTGTAAAGAGCCTTGATATCAGCCGGGATGTTTGGAACATTTTGGATTGATCCACCA-- 64668
Query 110599 CTTCACCA-TGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCAT 110654
||| || ||| | | |||||| | | |||||| || || || | ||| || |
Sbjct 64667 --TCAGCAATGATACGGTTCTTCATGTTGTCGGACCAAAGTCCCATATCGACGAGATCCT 64610
Query 110655 TGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGT 110714
||| || |||||||| || || || || ||| | || ||||||||
Sbjct 64609 TGAGAAGCCATGGGTTGACAACTTGGAATTCTCCAGCAAGGACACGTCGAGAGTAGATGT 64550
Query 110715 TTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGAGGCTGTT 110773
| | || ||||| || ||||| || ||| | |||||| |||| ||| |||||||
Sbjct 64549 TGGAGGTATATGGCTCGAAGCACTCGTTAA-ATCCAAGAATTTGACTGGTACTGGCTGTT 64491
Query 110774 GGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGA 110833
||||| || || | | | ||||||||| | ||| | | ||| ||| ||| |
Sbjct 64490 GGCATAGGAGCGACGAGCAAACTGTTACGGATACCGTGTTGAGAGATCTGTTGCTTCAAG 64431
Query 110834 ACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCC 110891
| |||| || | || | | ||| | || ||||||||||| | || ||| | |
Sbjct 64430 CTAGCCCAATCCCAAA-GATCGGTAGGTGTGACAC-CCCACATGTCATATTGGAGCTCGC 64373
Query 110892 CTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCAC 110951
| | || || || || || | | | || ||||| | ||| || | ||||| ||
Sbjct 64372 CCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATGGACCATGAATCTTTGCCAACTCCA 64313
Query 110952 AGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGG 111011
| || || | ||||| || ||||| || || || | || | | |||||
Sbjct 64312 TGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCGAAAATTTGGATGTTGAGGTGCTTGG 64253
Query 111012 CTTCATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACCTTGAACA 111070
| || || || || | | || | | | | || |||| || ||||||||||||
Sbjct 64252 CCTCCGGGGATTCGAAAG-GAAGACGAAGAGCCAAGAAGGCATCAGCAAGACCTTGAACA 64194
Query 111071 CCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAA 111127
|| | | ||||||||||||| || | ||| ||||| || |||| || || ||
Sbjct 64193 CCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTGC---CTCAGGAACCGGGTAG 64137
Query 111128 AAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GATTTCATGAAG 111186
| || || || | || | || ||| |||| ||| | || || |||||
Sbjct 64136 TAGTTGACATCGATAATCTTATTCAAGTTCTTGACGACAA-CTTGGCAGACCTCGTGAAG 64078
Query 111187 TTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGC 111246
|||| | ||| ||||| |||| |||| ||||| |||| || || | |||||
Sbjct 64077 CTTTTGGAAGTCATAAGTGGCGGTCTTCTCATCAACATAGGTTGGGAGAGCAAGCGATGC 64018
Query 111247 CAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTT 111306
||||||||||||||| |||||| | |||||| | ||||| || || |||||
Sbjct 64017 CAAATTGCAAACAGCGACCTCATCTGGTGCACAGTACTCGACGATTTCAGTGCACAAGTT 63958
Query 111307 GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTA 111366
||| || || || || | |||||||||||| ||||| |||||| |||||||||||
Sbjct 63957 GGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTA 63898
Query 111367 GAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGC 111426
|||||| | || | || ||||| || || | | || |||| | ||||| |
Sbjct 63897 AAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGGATAGAGTACCAAAGCTTTTG 63838
Query 111427 GGC--TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTC 111483
||| || | | | || | ||| | ||||| | |||||| || || | |||||
Sbjct 63837 GGCTTTGATGCTCTTGC---GACCCTTGCCCTCAGACTCGTATTTCTCATACAACGCTTC 63781
Query 111484 AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA 111543
||||| ||||| | |||| | ||| || || || || || | | | |||
Sbjct 63780 GAACTCGTCACCGTAGACATCGGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCA 63721
Query 111544 -TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 111602
| || ||| ||||| ||||||||||| || ||||||||||| || | | ||||
Sbjct 63720 GTCGAGATTCTT-TTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGA 63662
Query 111603 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 111662
|||| | ||| |||| || | || ||||| ||| | || |||||||| | |
Sbjct 63661 GATCACGGGCACGAACCTCCTCCTTTCCATGGTTCTTTCGGAGGTCGAGGAACTCGAAAA 63602
Query 111663 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAG 111716
||| ||||||||||||||||| |||| |||| || || ||||| |||
Sbjct 63601 CATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACC---AGGACGCTTGTTACCAC 63545
Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776
|||||| ||||| | || ||| ||| || || | ||||| |||| || || | |
Sbjct 63544 CTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTGAGCATAGGAACGATTCCGTTGG 63485
Query 111777 ATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCAC--ATCATGGATGTGC 111832
| | || || || || ||| ||| | | | || ||| || || || |
Sbjct 63484 AGTTTCCGTTAGTACCGGCGATATAAGCG------CCGGTCGCACGGATTCTG--TGAAC 63433
Query 111833 AT----CCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCA 111886
|| || ||||| ||||| |||||| || | ||||| | || ||| || |
Sbjct 63432 ATTGAGACCGATACCACCAGCATTCTTTGAAATCATGGCGCA-AATCTTTAA-CGTGTCG 63375
Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946
|| ||||| | || ||||||||| || ||||||||||||| || | || |
Sbjct 63374 TAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGCC 63315
Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACA 112004
|||||| ||||| |||||||||||| | ||||| |||| || ||| |||||
Sbjct 63314 TGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAA-GTA-TTTGCTGGACA 63257
Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064
|| || ||| ||||| | | ||| || || || || ||||| || |||| || || |
Sbjct 63256 TCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCGTGAATTCCGACCGCAACAC 63197
Query 112065 GCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTC 112123
|||| | ||| | |||||| ||| || |||||||||| || | ||||| | ||
Sbjct 63196 GCATAATCATATGCTGTGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGATC 63137
Query 112124 TTCTCAAGGGTTTTGAGACCAAAGTA 112149
||| ||||| |||| ||| |||||
Sbjct 63136 -GCTCGAGGGTCTTGAAACCGAAGTA 63112
>seq908
Length=77775
Score = 140 bits (154), Expect = 4e-28
Identities = 338/506 (67%), Gaps = 12/506 (2%)
Strand=Plus/Minus
Query 122380 ACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 122439
|| |||||||| |||||||||||||| || ||||| ||||| ||||||||||| |||
Sbjct 45575 ACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATAAAGTCGAAT 45516
Query 122440 GGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACGATCCGACAC 122498
|| || | || ||| | || || | |||||||||||| | ||
Sbjct 45515 GGGTTGGCAACCTTGTAAACCT-TCTCATTGCCGAGGGAAAGGAGGAGACGATCAGCGAC 45457
Query 122499 ATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGTGC 122558
|||||||||| | |||| | | |||||| |||| || ||| || || ||
Sbjct 45456 GAACTCAATGTATTGCTTCATCAGGTTGGCGTTCATGCCGAGAAGTGCACAAGGAAGAGC 45397
Query 122559 GTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTC 122618
|| | |||| ||| |||||||||||| ||||| | | || ||| |||| | |
Sbjct 45396 CTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTGCAGC 45337
Query 122619 GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA----AACTCCTGGTGGA 122674
| | || | || |||| |||||| | |||| || || |||||
Sbjct 45336 CTTGCTTGGGCGATGCTTCAAATGGGAGAAGAG----AAGGCATGCGAAGTCGGTGTGGA 45281
Query 122675 GACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCT 122734
|||||||||| ||||| || || || || |||||| ||||| | |||||| || || |
Sbjct 45280 GACCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGTT 45221
Query 122735 TCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAA 122794
|||||||||| | || | | ||| || || ||||||||||||||| ||| || |
Sbjct 45220 TCTTCAACCAGAAGATGGAGGCGAAAGAACCACTGAAGAAGATACCCTCAACAGCGGCGA 45161
Query 122795 ACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTGCCCAT 122853
| |||| ||| |||| ||| |||| | || | ||| | | | |||| | |||||
Sbjct 45160 AGGCAACAAGACGTTGGGCAAAGGTG-GACTCCTTGTCTTGGATCCATCGGACAGCCCAA 45102
Query 122854 TTCGCCTTCTTCTCAATACATGGTAC 122879
| |||||||||| ||| || || ||
Sbjct 45101 TCAGCCTTCTTCTTAATGCAGGGAAC 45076
>seq927
Length=373674
Score = 111 bits (122), Expect = 2e-19
Identities = 281/419 (67%), Gaps = 24/419 (6%)
Strand=Plus/Plus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG- 11598
|| |||||||||||||| | | ||||| | || ||||| ||||||||| |
Sbjct 175729 AAACCATCCATCTCGGTTAAAATCTGATTGAGAGTGGCTTCTCGTTCATCATTTCCACCA 175788
Query 11599 -CATACCA-CCAGC---ACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653
|| | | ||||| || || ||| || | ||||||||||| |||||||||| |
Sbjct 175789 CCAAATGAACCAGCTTTACCACGAGCCTTTCCGATTGCATCAATCTCGTCAATGAAGATA 175848
Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713
||||| || ||| | | ||| || | |||||||| ||||| || ||||| |||
Sbjct 175849 ATACAAGGGGTATTCTTTCTGGCCATCGCGAAGAGATCTCGAACTCTGGAAGCACCAACA 175908
Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-----GATGAATGGGACATTTG 11768
|| ||||||||||||||||| | ||| | ||||| || ||| || ||| |
Sbjct 175909 CCGACAAACATCTCCACAAACT---CGG--AACCACTGACGCTGAAGAAAGGTACACCCG 175963
Query 11769 ATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAA 11828
|||| || || |||| || || | ||||| || ||||| || ||| | || |
Sbjct 175964 ATTCTCCGGCTGTGGCCTTTGCTAGTAAAGTCTTACCGGTACCAGGTGGACCAGAAAGGA 176023
Query 11829 GGGCGCCTCGGGGGATCTTGGCACC---ACTTCCAAAATATCTCTCGGGTTGCTTGAGAA 11885
||| ||||| |||||||| ||||| ||| | | || ||| ||| ||| ||||
Sbjct 176024 TGGCTCCTCGAGGGATCTTAGCACCCAATCTTTCGA---ATTGCTCAGGTGTCTTTAGAA 176080
Query 11886 AATCCAC-AATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCACTGAA 11943
| || ||| | | | | |||| ||||| |||| || ||| ||||||| ||||
Sbjct 176081 ATGAAACGAATTCCATAATCTCCATC-TTGGCTTCGTCCATACCCGCAACATCCTTGAA 176138
>seq567
Length=145468
Score = 84.2 bits (92), Expect = 3e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 164657 TGGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCA 164716
||| || ||||| |||||| | ||||| || ||||||||||| | |||||||||||
Sbjct 88607 TGGCGCAGGTGTAATTGATGCTGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTCAATCA 88666
Query 164717 CGGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCG 164776
||| || ||||| || ||||| ||| | || ||||| | || ||| | ||| | ||| |
Sbjct 88667 CGGCGAGAAAGATTTCGAGGTCAAGGAGGGAGATCGTGTAGCTCAATTGGTCTTGGAGAG 88726
Query 164777 CTGTGAAACACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACGGAGAGAGGTGCGGG 164836
| |||||||| || ||| | | | ||||||| | || || |||||
Sbjct 88727 AATCTACACACCCGAGGTCTTGGAGGTCCAGGAATTGGAAGAGAGCGTTAGGGGAGCGGG 88786
Query 164837 TGGATTTGG 164845
||||||||
Sbjct 88787 AGGATTTGG 88795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628018544414400
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