Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq843 264 1e-65 seq908 140 4e-28 seq927 111 2e-19 seq567 84.2 3e-11 >seq843 Length=104768 Score = 264 bits (292), Expect = 1e-65 Identities = 1180/1826 (65%), Gaps = 75/1826 (4%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTAC-ATATGCATAGAAGA 110421 |||||||||||||| || |||||||| || | ||||| || | | | ||||||| | Sbjct 64901 CGGAGATAGTACATTCCAGTCTTGAGACCCAGCTTCCA-GCCTGCGAAATGCATACTGGT 64843 Query 110422 GAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAA 110481 || ||| ||| ||||| | |||| || |||||| |||| ||| |||||||| Sbjct 64842 GATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAA 64783 Query 110482 -GCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCAT--CTTAATTTCCCAAACTGT 110538 || || | || | || ||||| | | || | | | | | || |||||||| || Sbjct 64782 TGCACCACGGTCG-GCAGCCATCTGGACGA--TGGTACGTTGCGAGATCTCCCAAACGGT 64726 Query 110539 GCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGC 110598 || ||| |||||||||| | ||||| | || | ||| ||||| || || || Sbjct 64725 CTTGTAAAGAGCCTTGATATCAGCCGGGATGTTTGGAACATTTTGGATTGATCCACCA-- 64668 Query 110599 CTTCACCA-TGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCAT 110654 ||| || ||| | | |||||| | | |||||| || || || | ||| || | Sbjct 64667 --TCAGCAATGATACGGTTCTTCATGTTGTCGGACCAAAGTCCCATATCGACGAGATCCT 64610 Query 110655 TGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGT 110714 ||| || |||||||| || || || || ||| | || |||||||| Sbjct 64609 TGAGAAGCCATGGGTTGACAACTTGGAATTCTCCAGCAAGGACACGTCGAGAGTAGATGT 64550 Query 110715 TTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGAGGCTGTT 110773 | | || ||||| || ||||| || ||| | |||||| |||| ||| ||||||| Sbjct 64549 TGGAGGTATATGGCTCGAAGCACTCGTTAA-ATCCAAGAATTTGACTGGTACTGGCTGTT 64491 Query 110774 GGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGA 110833 ||||| || || | | | ||||||||| | ||| | | ||| ||| ||| | Sbjct 64490 GGCATAGGAGCGACGAGCAAACTGTTACGGATACCGTGTTGAGAGATCTGTTGCTTCAAG 64431 Query 110834 ACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCC 110891 | |||| || | || | | ||| | || ||||||||||| | || ||| | | Sbjct 64430 CTAGCCCAATCCCAAA-GATCGGTAGGTGTGACAC-CCCACATGTCATATTGGAGCTCGC 64373 Query 110892 CTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCAC 110951 | | || || || || || | | | || ||||| | ||| || | ||||| || Sbjct 64372 CCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATGGACCATGAATCTTTGCCAACTCCA 64313 Query 110952 AGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGG 111011 | || || | ||||| || ||||| || || || | || | | ||||| Sbjct 64312 TGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCGAAAATTTGGATGTTGAGGTGCTTGG 64253 Query 111012 CTTCATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACCTTGAACA 111070 | || || || || | | || | | | | || |||| || |||||||||||| Sbjct 64252 CCTCCGGGGATTCGAAAG-GAAGACGAAGAGCCAAGAAGGCATCAGCAAGACCTTGAACA 64194 Query 111071 CCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAA 111127 || | | ||||||||||||| || | ||| ||||| || |||| || || || Sbjct 64193 CCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTGC---CTCAGGAACCGGGTAG 64137 Query 111128 AAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GATTTCATGAAG 111186 | || || || | || | || ||| |||| ||| | || || ||||| Sbjct 64136 TAGTTGACATCGATAATCTTATTCAAGTTCTTGACGACAA-CTTGGCAGACCTCGTGAAG 64078 Query 111187 TTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGC 111246 |||| | ||| ||||| |||| |||| ||||| |||| || || | ||||| Sbjct 64077 CTTTTGGAAGTCATAAGTGGCGGTCTTCTCATCAACATAGGTTGGGAGAGCAAGCGATGC 64018 Query 111247 CAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTT 111306 ||||||||||||||| |||||| | |||||| | ||||| || || ||||| Sbjct 64017 CAAATTGCAAACAGCGACCTCATCTGGTGCACAGTACTCGACGATTTCAGTGCACAAGTT 63958 Query 111307 GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTA 111366 ||| || || || || | |||||||||||| ||||| |||||| ||||||||||| Sbjct 63957 GGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTA 63898 Query 111367 GAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGC 111426 |||||| | || | || ||||| || || | | || |||| | ||||| | Sbjct 63897 AAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGGATAGAGTACCAAAGCTTTTG 63838 Query 111427 GGC--TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTC 111483 ||| || | | | || | ||| | ||||| | |||||| || || | ||||| Sbjct 63837 GGCTTTGATGCTCTTGC---GACCCTTGCCCTCAGACTCGTATTTCTCATACAACGCTTC 63781 Query 111484 AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA 111543 ||||| ||||| | |||| | ||| || || || || || | | | ||| Sbjct 63780 GAACTCGTCACCGTAGACATCGGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCA 63721 Query 111544 -TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 111602 | || ||| ||||| ||||||||||| || ||||||||||| || | | |||| Sbjct 63720 GTCGAGATTCTT-TTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGA 63662 Query 111603 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 111662 |||| | ||| |||| || | || ||||| ||| | || |||||||| | | Sbjct 63661 GATCACGGGCACGAACCTCCTCCTTTCCATGGTTCTTTCGGAGGTCGAGGAACTCGAAAA 63602 Query 111663 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAG 111716 ||| ||||||||||||||||| |||| |||| || || ||||| ||| Sbjct 63601 CATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACC---AGGACGCTTGTTACCAC 63545 Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 |||||| ||||| | || ||| ||| || || | ||||| |||| || || | | Sbjct 63544 CTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTGAGCATAGGAACGATTCCGTTGG 63485 Query 111777 ATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCAC--ATCATGGATGTGC 111832 | | || || || || ||| ||| | | | || ||| || || || | Sbjct 63484 AGTTTCCGTTAGTACCGGCGATATAAGCG------CCGGTCGCACGGATTCTG--TGAAC 63433 Query 111833 AT----CCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCA 111886 || || ||||| ||||| |||||| || | ||||| | || ||| || | Sbjct 63432 ATTGAGACCGATACCACCAGCATTCTTTGAAATCATGGCGCA-AATCTTTAA-CGTGTCG 63375 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 || ||||| | || ||||||||| || ||||||||||||| || | || | Sbjct 63374 TAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGCC 63315 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACA 112004 |||||| ||||| |||||||||||| | ||||| |||| || ||| ||||| Sbjct 63314 TGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAA-GTA-TTTGCTGGACA 63257 Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064 || || ||| ||||| | | ||| || || || || ||||| || |||| || || | Sbjct 63256 TCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCGTGAATTCCGACCGCAACAC 63197 Query 112065 GCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTC 112123 |||| | ||| | |||||| ||| || |||||||||| || | ||||| | || Sbjct 63196 GCATAATCATATGCTGTGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGATC 63137 Query 112124 TTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| ||||| |||| ||| ||||| Sbjct 63136 -GCTCGAGGGTCTTGAAACCGAAGTA 63112 >seq908 Length=77775 Score = 140 bits (154), Expect = 4e-28 Identities = 338/506 (67%), Gaps = 12/506 (2%) Strand=Plus/Minus Query 122380 ACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 122439 || |||||||| |||||||||||||| || ||||| ||||| ||||||||||| ||| Sbjct 45575 ACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATAAAGTCGAAT 45516 Query 122440 GGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACGATCCGACAC 122498 || || | || ||| | || || | |||||||||||| | || Sbjct 45515 GGGTTGGCAACCTTGTAAACCT-TCTCATTGCCGAGGGAAAGGAGGAGACGATCAGCGAC 45457 Query 122499 ATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGTGC 122558 |||||||||| | |||| | | |||||| |||| || ||| || || || Sbjct 45456 GAACTCAATGTATTGCTTCATCAGGTTGGCGTTCATGCCGAGAAGTGCACAAGGAAGAGC 45397 Query 122559 GTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTC 122618 || | |||| ||| |||||||||||| ||||| | | || ||| |||| | | Sbjct 45396 CTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTGCAGC 45337 Query 122619 GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA----AACTCCTGGTGGA 122674 | | || | || |||| |||||| | |||| || || ||||| Sbjct 45336 CTTGCTTGGGCGATGCTTCAAATGGGAGAAGAG----AAGGCATGCGAAGTCGGTGTGGA 45281 Query 122675 GACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCT 122734 |||||||||| ||||| || || || || |||||| ||||| | |||||| || || | Sbjct 45280 GACCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGTT 45221 Query 122735 TCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAA 122794 |||||||||| | || | | ||| || || ||||||||||||||| ||| || | Sbjct 45220 TCTTCAACCAGAAGATGGAGGCGAAAGAACCACTGAAGAAGATACCCTCAACAGCGGCGA 45161 Query 122795 ACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTGCCCAT 122853 | |||| ||| |||| ||| |||| | || | ||| | | | |||| | ||||| Sbjct 45160 AGGCAACAAGACGTTGGGCAAAGGTG-GACTCCTTGTCTTGGATCCATCGGACAGCCCAA 45102 Query 122854 TTCGCCTTCTTCTCAATACATGGTAC 122879 | |||||||||| ||| || || || Sbjct 45101 TCAGCCTTCTTCTTAATGCAGGGAAC 45076 >seq927 Length=373674 Score = 111 bits (122), Expect = 2e-19 Identities = 281/419 (67%), Gaps = 24/419 (6%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG- 11598 || |||||||||||||| | | ||||| | || ||||| ||||||||| | Sbjct 175729 AAACCATCCATCTCGGTTAAAATCTGATTGAGAGTGGCTTCTCGTTCATCATTTCCACCA 175788 Query 11599 -CATACCA-CCAGC---ACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 || | | ||||| || || ||| || | ||||||||||| |||||||||| | Sbjct 175789 CCAAATGAACCAGCTTTACCACGAGCCTTTCCGATTGCATCAATCTCGTCAATGAAGATA 175848 Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 ||||| || ||| | | ||| || | |||||||| ||||| || ||||| ||| Sbjct 175849 ATACAAGGGGTATTCTTTCTGGCCATCGCGAAGAGATCTCGAACTCTGGAAGCACCAACA 175908 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-----GATGAATGGGACATTTG 11768 || ||||||||||||||||| | ||| | ||||| || ||| || ||| | Sbjct 175909 CCGACAAACATCTCCACAAACT---CGG--AACCACTGACGCTGAAGAAAGGTACACCCG 175963 Query 11769 ATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAA 11828 |||| || || |||| || || | ||||| || ||||| || ||| | || | Sbjct 175964 ATTCTCCGGCTGTGGCCTTTGCTAGTAAAGTCTTACCGGTACCAGGTGGACCAGAAAGGA 176023 Query 11829 GGGCGCCTCGGGGGATCTTGGCACC---ACTTCCAAAATATCTCTCGGGTTGCTTGAGAA 11885 ||| ||||| |||||||| ||||| ||| | | || ||| ||| ||| |||| Sbjct 176024 TGGCTCCTCGAGGGATCTTAGCACCCAATCTTTCGA---ATTGCTCAGGTGTCTTTAGAA 176080 Query 11886 AATCCAC-AATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCACTGAA 11943 | || ||| | | | | |||| ||||| |||| || ||| ||||||| |||| Sbjct 176081 ATGAAACGAATTCCATAATCTCCATC-TTGGCTTCGTCCATACCCGCAACATCCTTGAA 176138 >seq567 Length=145468 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 164657 TGGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCA 164716 ||| || ||||| |||||| | ||||| || ||||||||||| | ||||||||||| Sbjct 88607 TGGCGCAGGTGTAATTGATGCTGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTCAATCA 88666 Query 164717 CGGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCG 164776 ||| || ||||| || ||||| ||| | || ||||| | || ||| | ||| | ||| | Sbjct 88667 CGGCGAGAAAGATTTCGAGGTCAAGGAGGGAGATCGTGTAGCTCAATTGGTCTTGGAGAG 88726 Query 164777 CTGTGAAACACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACGGAGAGAGGTGCGGG 164836 | |||||||| || ||| | | | ||||||| | || || ||||| Sbjct 88727 AATCTACACACCCGAGGTCTTGGAGGTCCAGGAATTGGAAGAGAGCGTTAGGGGAGCGGG 88786 Query 164837 TGGATTTGG 164845 |||||||| Sbjct 88787 AGGATTTGG 88795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628018544414400