Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq843 235 7e-57 seq908 145 9e-30 >seq843 Length=104768 Score = 235 bits (260), Expect = 7e-57 Identities = 1134/1774 (64%), Gaps = 57/1774 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||| ||||||||| || ||| | | ||||| |||||||| || |||||||| | Sbjct 64933 TGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGAC 64874 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || |||||||| | | |||||| || | ||| | |||||| | |||| Sbjct 64873 CCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGT 64814 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || |||||| ||| |||||||| ||||| || || || || ||||| | | | Sbjct 64813 GGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACGA 64754 Query 117985 CATCCTTCAT--CTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGAT 118042 | | | | | ||| ||||| || ||| |||| || ||| |||||| | ||||| Sbjct 64753 --TGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGAT 64696 Query 118043 ATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGA 118102 | | ||||||||| |||||||| | | || | | |||||| | | || Sbjct 64695 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 64636 Query 118103 CCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCA 118160 ||| || || || | |||||||| | || ||| | ||||||| || || Sbjct 64635 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGT--TGACAACTTGGAATTCT 64578 Query 118161 CCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 118219 || || ||| |||| ||| ||||| |||| || |||||||| |||||||| || Sbjct 64577 CCAGCAAGGACACGTCG-AGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAA- 64520 Query 118220 ACCCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 118278 | |||||| || | ||| | |||||| ||||| || || | ||| | |||||||||| Sbjct 64519 ATCCAAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGA 64460 Query 118279 GACCCTTTTCCCTAATGCGTTCCTTGAG---AGCG---TCCCAGTCGTAGTTGAGCTTTG 118332 ||| | || || ||| ||| | ||| ||||| | | | || | || Sbjct 64459 TACCGTGTTGAGAGATCTGTTGCTTCAAGCTAGCCCAATCCCAAAGATCGGT-AGGTGTG 64401 Query 118333 TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 118392 | |||| |||| ||| | ||||| || | || || ||||| || | | | | Sbjct 64400 ACACCCC-----ACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAG 64346 Query 118393 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 118452 |||||||||| || | || || ||||| || | || | || ||||| || | Sbjct 64345 TCTCATATGGACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAA 64286 Query 118453 TTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG-- 118510 | || || ||||| | || | ||||||||| ||| || || | || || Sbjct 64285 TGGTCTCGAAAATTTGGATGTTGAGGTGCTTGGCCTCCGGGGATTCGAAAGGAAGACGAA 64226 Query 118511 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 118570 | | || || |||| || |||||||| |||||||| |||| || | || | | Sbjct 64225 GAGCCAAG--AAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAA 64168 Query 118571 ATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAG 118627 ||| ||| | || ||| || || || | || |||||||| | |||| | Sbjct 64167 ATTGCTCTTTCTTGC---CTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAA 64111 Query 118628 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 118687 || ||| |||||| | || || |||||||||| | | ||| || || |||| Sbjct 64110 GTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTT 64051 Query 118688 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747 |||| ||||| | || || || | || |||| ||| || |||| | |||||| Sbjct 64050 CTCATCAACATAGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG 63991 Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 || |||||| | ||||| ||||||||||| || || ||||| || | ||||| Sbjct 63990 TGCACAGTACTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTT 63931 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867 ||| || |||| ||| || |||||||||||||||||| | || | || ||||| || Sbjct 63930 TTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGT 63871 Query 118868 TTGGGACTTGAGAATAGCCTTCC--AGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGC 118925 ||| | || || |||| | || || | || || | | ||| || | Sbjct 63870 TTGAGCCTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTCTTGCG-ACCCTTG- 63813 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 ||||| |||||| || || | ||||| ||||| ||||| | | || | | Sbjct 63812 CCCTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAA 63753 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 || || || | ||||| | | | ||| | | || ||||| ||||||||| Sbjct 63752 CCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGATTCTTTTCAACACGCTTCATG 63693 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105 ||||| ||||| |||||||| || |||||||||| || ||| | || || | || Sbjct 63692 AAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCA 63633 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 || || || | || | || || | | ||| |||||||| || || ||||| | Sbjct 63632 TGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATG 63573 Query 119166 GCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTA 119219 |||| | || | |||| |||| | || | ||||| || || ||| ||| Sbjct 63572 GCGAAAGCACC---AGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTG 63516 Query 119220 AATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAG 119277 || || | ||||| |||| ||| || | ||| | || || || || ||| ||| | | Sbjct 63515 AAAACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCG 63456 Query 119278 ACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 119337 | | || | || ||| | | | ||| ||||| || || |||||| || Sbjct 63455 CC--GGTCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCATTCTTTGAAATCA 63398 Query 119338 GCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 119397 ||||| | | | || |||| || ||||| || ||| |||| | |||| | Sbjct 63397 TGGCGCAAATCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAA 63338 Query 119398 GGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCG 119456 |||||||| || | ||| ||||| ||||| ||||| |||||| ||||| | ||| Sbjct 63337 GGAAGCAGGATGAAAGTTG-TGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCG 63279 Query 119457 TGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTT 119514 ||| |||| || ||| ||||||| || ||||||||| | | | || || || | Sbjct 63278 TGGGTGAA-GTA-TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCT 63221 Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 | |||||||| |||| || || ||||||| ||| Sbjct 63220 CACCGTGAATTCCGACCGCAACACGCATAATCAT 63187 >seq908 Length=77775 Score = 145 bits (160), Expect = 9e-30 Identities = 303/447 (68%), Gaps = 12/447 (3%) Strand=Plus/Minus Query 129735 CAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAA 129794 |||| ||||||||||||||||| ||||| ||| | | | ||| ||||||||||| || | Sbjct 45577 CAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATAAAGTCGA 45518 Query 129795 ATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACT-CCAATCTGTTTGAGGAGACGATCCGA 129852 ||||||| || ||| | || || | || | |||||||||||| | Sbjct 45517 ATGGGTTGGCAACCTTGTAAACCTTCT--CATTGCCGAGGGAAAGGAGGAGACGATCAGC 45460 Query 129853 GACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGAG 129912 |||| |||||||||| | |||| | || |||||| |||| || ||| || || Sbjct 45459 GACGAACTCAATGTATTGCTTCATCAGGTTGGCGTTCATGCCGAGAAGTGCACAAGGAAG 45400 Query 129913 CGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGT 129972 || || | |||| | | |||||| || ||||| || | || ||| || | | Sbjct 45399 AGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTGC 45340 Query 129973 CTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCA----AACTCCTGGT 130028 || ||| || | || |||| |||||| | |||| || || || Sbjct 45339 AGCCTTGCTTGGGCGATGCTTCAAATGGGAGAAGAG----AAGGCATGCGAAGTCGGTGT 45284 Query 130029 GGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCC 130088 |||||||||| ||||||||||| || || || |||||| ||||| | |||||| || | Sbjct 45283 GGAGACCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCAC 45224 Query 130089 GCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACG 130148 | |||||||||||||| || | || || ||| ||||||||| ||||| ||| | Sbjct 45223 GTTTCTTCAACCAGAAGATGGAGGCGAAAGAACCACTGAAGAAGATACCCTCAACAGCGG 45164 Query 130149 CGAACGCAAAGAGACGCTCAGCAAAGG 130175 |||| |||| ||||| | ||||||| Sbjct 45163 CGAAGGCAACAAGACGTTGGGCAAAGG 45137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618421950025840