Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq843 313 3e-80 seq908 113 5e-20 seq927 107 2e-18 >seq843 Length=104768 Score = 313 bits (346), Expect = 3e-80 Identities = 1203/1843 (65%), Gaps = 91/1843 (5%) Strand=Plus/Plus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGAT 104214 || || ||| |||| ||||| ||| || | ||||| | || |||||||| | ||| Sbjct 63112 TACTTCGGTTTCAAGACCCTCGAGC-GATCATATCTCCTCCGCCTCGATGG---CAAGAT 63167 Query 104215 G---GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 ||| |||||| | ||| | ||||| || || |||| ||||| || || || || Sbjct 63168 CTGCGAACGTCCACAGCATATGATTATGCGTGTTGCGGTCGGAATTCACGGTGAGGATAT 63227 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACA 104329 || ||| | | ||||| ||| || ||||||| ||| || |||| ||||| | Sbjct 63228 CGAGGCTGCCATCGAGACCTACAACTTGATGTCCAGCAAA-TAC-TTCACCCACGCCTCC 63285 Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389 |||||||||||| ||||| |||||| | ||| | || ||||||||||||| | Sbjct 63286 CCAACCCTCTTCGCAGCTGGCACACCACAGGCACAACTTTCATCCTGCTTCCTTATCGAC 63345 Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCT 104447 | ||||||||| || | ||||| || | || ||| || | ||||| | || | Sbjct 63346 ATGAAGGAGGACAGCATTGATGGTATTTACGACACG-TTAAAGATT-TGCGCCATGATTT 63403 Query 104448 CAAAGTGGGCTGGGGGTATTGGG----ATGCACATCCATGAT--GTGAGAGCCAATAAAT 104501 ||||| ||||| ||||| || ||| || || || ||| || | Sbjct 63404 CAAAGAATGCTGGTGGTATCGGTCTCAATGTTCA--CAGAATCCGTGCGACCGG------ 63455 Query 104502 CTCGTAT-TCGGGGG-ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATT 104559 | | ||| ||| || || || || | || | || || |||| ||||| | || || Sbjct 63456 CGCTTATATCGCCGGTACTAACGGAAACTCCAACGGAATCGTTCCTATGCTCAGAGTTTT 63515 Query 104560 TAACGCCACAGCGCGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGC 104613 ||| ||| || | ||||| |||||| ||| ||||| || || |||| Sbjct 63516 CAACAACACCGCCAGATATGTTGATCAAGGTGGTAACAAGCGTCCT---GGTGCTTTCGC 63572 Query 104614 AGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCA 104673 |||| ||||||||||||||||| ||| | | |||||||| || | || ||||| Sbjct 63573 CATCTACCTTGAGCCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCA 63632 Query 104674 AGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733 || | ||||||| || ||| |||||||||| |||||||||||||||||||||||| Sbjct 63633 TGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTT 63692 Query 104734 CATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGG 104793 ||||||| | ||||| ||| | | | ||| | | | || || || || ||||| Sbjct 63693 CATGAAGCGTGTTGAAAAGAATCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGG 63752 Query 104794 TCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGG 104853 | | |||||| | ||||| ||||| ||||| | || || |||||| | ||| Sbjct 63753 TTTGGCCGATGTCTACGGTGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTG-AGG 63811 Query 104854 TCGGGCGACTGC--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAA 104911 | | | | || || | ||| | | ||| | |||| || || ||||| Sbjct 63812 GCAAGGGTC-GCAAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCAA 63870 Query 104912 ACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAA 104971 || ||||| || | || | |||||||||||| || || || |||| |||||| || ||| Sbjct 63871 ACTGAGACCGGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAA 63930 Query 104972 AAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-A 105030 |||||| | ||| ||| || ||||| | || || |||||| | || ||| | Sbjct 63931 AAGAATCTCGGTACCATCCGAAGCTCCAACTTGTGCACTGAAATCGTCGA--GTACTGTG 63988 Query 105031 CA-AAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATC 105089 || ||||||| ||||| || || | ||||| | |||||||| | ||||| ||| Sbjct 63989 CACCAGATGAGGTCGCTGTTTGCAATTTGGCATCGCTTGCTCTCCCAACCTATGTTGATG 64048 Query 105090 CAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAA 105149 |||| || | ||| | |||| || ||||| || || |||| ||| | Sbjct 64049 AGAAGACCGCCACTTATGACTTCCAAAAGCTTCACGAGGTCTGCCAAGTTGTCGTCAAGA 64108 Query 105150 ACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTA 105206 || | || | |||| ||| || | ||||| || |||| || | || | Sbjct 64109 ACTTGAATAAGATTATCGATGTCAACTACTACCCGGTTCCTGAG---GCAAGAAAGAGCA 64165 Query 105207 ATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TC 105263 || | | ||| | || |||| |||||||||||| ||||| || |||| ||| | || Sbjct 64166 ATTTCCGTCACAGACCTATTGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTC 64225 Query 105264 TTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGA 105323 || ||| | | || || ||| || || ||| | |||| | || || |||| Sbjct 64226 TTCGTCTTC---CTTTCGAATCCCCGGAGGCCAAGCACCTCAACATCCAAATTTTCGAGA 64282 Query 105324 CCATGTATCACGCCGCTCTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATA 105381 |||| || ||||| ||| |||| | | || ||||||||| || || |||||||||| Sbjct 64283 CCATTTACCACGCTGCT-TTGA-CTGCTTCCATGGAGTTGGCAAAGATTCATGGTCCATA 64340 Query 105382 TGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGG 105441 ||| || | | | || || || || || | || | ||| |||| ||| ||||||| | Sbjct 64341 TGAGACTTATCAAGGCTCGCCTGCCTCTAAGGGCGAGCTCCAATATGACATGTGGG-GTG 64399 Query 105442 TGAGACCAAGC-TTCACTACGACTGGG-AAGCTCTCAAGGAACGCATCAAGGAGAAGGGT 105499 | | ||| | | || | || |||| |||| | ||| ||| ||| | | ||| Sbjct 64400 TCACACCTACCGATCTTTGGGATTGGGCTAGCT-TGAAGCAACAGATCTCTCAACACGGT 64458 Query 105500 CTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGG 105558 | ||||||||| | ||| | ||||| |||||||||||| ||| |||| |||||| Sbjct 64459 ATCCGTAACAGTTTGCTCGTCGCTCCTATGCCAACAGCCAGTACCAGTCAAATTCTTGGA 64518 Query 105559 TAATAATGAATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGG 105617 | ||| || ||||| || || || || | |||||||| ||| || | ||| || | Sbjct 64519 T-TTAACGAGTGCTTCGAGCCATATACCTCCAACATCTACTCT-CGACGTGTCCTTGCTG 64576 Query 105618 GAGAGTTTGTGATTGTCAAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCT 105674 |||| || |||||||| || |||| |||| ||| || || || || | Sbjct 64577 GAGAATTCCAAGTTGTCAACCCATGGCTTCTCAAGGAT---CTCGTCGATATGGGACTTT 64633 Query 105675 GGTCCAAGGATATGAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATT 105730 ||||| | | |||||| | | ||| || ||| ||||| || || |||||| || Sbjct 64634 GGTCCGACAACATGAAGAACCGTATCATTGCTGA----TGGTGGATCAATCCAAAATGTT 64689 Query 105731 GTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAG--ATGA 105788 | || || ||| || ||| | ||| || |||||||| ||| | | | Sbjct 64690 CCAAACATCCCGGCTGATATCAAGGCTCTTTACAAGACCGTTTGGGAGATCTCGCAACGT 64749 Query 105789 AGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA 105848 | | || | | ||||| || || |||||| |||||||||||| |||| |||| Sbjct 64750 ACCA--TCGTCCAGATGGCTGCCGACCGTGGTGCATTCATTGATCAATCTCAATCAATGA 64807 Query 105849 ATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGA 105908 | || |||| | ||||| ||| ||| || | |||||| | | |||| Sbjct 64808 ACATCCACATGAAGGACCCAACCATGGGTAAGATCACCAGTATGCATTTCGCAGGCTGGA 64867 Query 105909 AGAAGGGTCTCAAAACGGGGATGTATTACCTCCGATCTAAGGC 105951 || ||||||||| || || ||||| || ||||| ||| ||| Sbjct 64868 AGCTGGGTCTCAAGACTGGAATGTACTATCTCCGTACTATGGC 64910 >seq908 Length=77775 Score = 113 bits (124), Expect = 5e-20 Identities = 155/214 (72%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTC 94790 |||||| || ||| | ||||| || ||||||||| | ||| | | |||| |||| Sbjct 45075 AGTTCCCTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTC 45134 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 ||||||| | || || | || || || ||||||||||||||||||| ||| Sbjct 45135 CA---CCTTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGG 45191 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 ||| ||| | | || | ||| | ||||| || || |||||| | ||||| |||||| Sbjct 45192 TTCTTTCGCCTCCATCTTCTGGTTGAAGAAACGTGGCCTCATGGCTGGTCTTACCTTCTC 45251 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||||||| ||||| ||||| ||||| |||||| Sbjct 45252 CAACGAGCTGATCTCCCGTGATGAGGGTCTCCAC 45285 >seq927 Length=373674 Score = 107 bits (118), Expect = 2e-18 Identities = 279/419 (67%), Gaps = 20/419 (5%) Strand=Plus/Plus Query 9606 CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCAT 9665 || ||| |||||||||||||| || |||| || || | ||| ||| |||||||||| Sbjct 175721 CAGTATTGAAACCATCCATCTCGGTTAAAATCTGATTGAGAGTGGCTTCTCGTTCATCAT 175780 Query 9666 T--CGCTGGCATACCA-CCAGC---ACTGCGTTGCTTTCCCACGGCATCAATCTCATCAA 9719 | | | || | | ||||| || || |||||| | ||||||||||| |||| Sbjct 175781 TTCCACCACCAAATGAACCAGCTTTACCACGAGCCTTTCCGATTGCATCAATCTCGTCAA 175840 Query 9720 TGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGG 9779 |||||| || || || ||| | | || | | |||||||| || || | | Sbjct 175841 TGAAGATAATACAAGGGGTATTCTTTCTGGCCATCGCGAAGAGATCTCGAACTCTGGAAG 175900 Query 9780 CGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CATTG-----GATGAAGG 9833 | || ||||| ||||||||||||||||| | ||||| || || || ||| | Sbjct 175901 CACCAACACCGACAAACATCTCCACAAACT------CGGAACCACTGACGCTGAAGAAAG 175954 Query 9834 GGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTAC 9893 | ||| ||||| || || |||| || || | ||||||||| ||||| || || Sbjct 175955 GTACACCCGATTCTCCGGCTGTGGCCTTTGCTAGTAAAGTCTTACCGGTACCAGGTGGAC 176014 Query 9894 CCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCT 9953 | | |||| ||| ||||| || ||||| || || || | || ||||||| || Sbjct 176015 CAGAAAGGATGGCTCCTCGAGGGATCTTAGCACCCAATCTTTCGAATTGCTCAGGTGTCT 176074 Query 9954 TAAGAAAATCCAC-AATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 | ||||| || |||| | | | |||| ||||| |||| || ||| ||||||| Sbjct 176075 TTAGAAATGAAACGAATTCCATAATCTCCATC-TTGGCTTCGTCCATACCCGCAACATC 176132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583248303637360