Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq843 313 3e-80
seq908 113 5e-20
seq927 107 2e-18
>seq843
Length=104768
Score = 313 bits (346), Expect = 3e-80
Identities = 1203/1843 (65%), Gaps = 91/1843 (5%)
Strand=Plus/Plus
Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGAT 104214
|| || ||| |||| ||||| ||| || | ||||| | || |||||||| | |||
Sbjct 63112 TACTTCGGTTTCAAGACCCTCGAGC-GATCATATCTCCTCCGCCTCGATGG---CAAGAT 63167
Query 104215 G---GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271
||| |||||| | ||| | ||||| || || |||| ||||| || || || ||
Sbjct 63168 CTGCGAACGTCCACAGCATATGATTATGCGTGTTGCGGTCGGAATTCACGGTGAGGATAT 63227
Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACA 104329
|| ||| | | ||||| ||| || ||||||| ||| || |||| ||||| |
Sbjct 63228 CGAGGCTGCCATCGAGACCTACAACTTGATGTCCAGCAAA-TAC-TTCACCCACGCCTCC 63285
Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389
|||||||||||| ||||| |||||| | ||| | || ||||||||||||| |
Sbjct 63286 CCAACCCTCTTCGCAGCTGGCACACCACAGGCACAACTTTCATCCTGCTTCCTTATCGAC 63345
Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCT 104447
| ||||||||| || | ||||| || | || ||| || | ||||| | || |
Sbjct 63346 ATGAAGGAGGACAGCATTGATGGTATTTACGACACG-TTAAAGATT-TGCGCCATGATTT 63403
Query 104448 CAAAGTGGGCTGGGGGTATTGGG----ATGCACATCCATGAT--GTGAGAGCCAATAAAT 104501
||||| ||||| ||||| || ||| || || || ||| || |
Sbjct 63404 CAAAGAATGCTGGTGGTATCGGTCTCAATGTTCA--CAGAATCCGTGCGACCGG------ 63455
Query 104502 CTCGTAT-TCGGGGG-ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATT 104559
| | ||| ||| || || || || | || | || || |||| ||||| | || ||
Sbjct 63456 CGCTTATATCGCCGGTACTAACGGAAACTCCAACGGAATCGTTCCTATGCTCAGAGTTTT 63515
Query 104560 TAACGCCACAGCGCGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGC 104613
||| ||| || | ||||| |||||| ||| ||||| || || ||||
Sbjct 63516 CAACAACACCGCCAGATATGTTGATCAAGGTGGTAACAAGCGTCCT---GGTGCTTTCGC 63572
Query 104614 AGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCA 104673
|||| ||||||||||||||||| ||| | | |||||||| || | || |||||
Sbjct 63573 CATCTACCTTGAGCCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCA 63632
Query 104674 AGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733
|| | ||||||| || ||| |||||||||| ||||||||||||||||||||||||
Sbjct 63633 TGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTT 63692
Query 104734 CATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGG 104793
||||||| | ||||| ||| | | | ||| | | | || || || || |||||
Sbjct 63693 CATGAAGCGTGTTGAAAAGAATCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGG 63752
Query 104794 TCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGG 104853
| | |||||| | ||||| ||||| ||||| | || || |||||| | |||
Sbjct 63753 TTTGGCCGATGTCTACGGTGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTG-AGG 63811
Query 104854 TCGGGCGACTGC--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAA 104911
| | | | || || | ||| | | ||| | |||| || || |||||
Sbjct 63812 GCAAGGGTC-GCAAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCAA 63870
Query 104912 ACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAA 104971
|| ||||| || | || | |||||||||||| || || || |||| |||||| || |||
Sbjct 63871 ACTGAGACCGGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAA 63930
Query 104972 AAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-A 105030
|||||| | ||| ||| || ||||| | || || |||||| | || ||| |
Sbjct 63931 AAGAATCTCGGTACCATCCGAAGCTCCAACTTGTGCACTGAAATCGTCGA--GTACTGTG 63988
Query 105031 CA-AAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATC 105089
|| ||||||| ||||| || || | ||||| | |||||||| | ||||| |||
Sbjct 63989 CACCAGATGAGGTCGCTGTTTGCAATTTGGCATCGCTTGCTCTCCCAACCTATGTTGATG 64048
Query 105090 CAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAA 105149
|||| || | ||| | |||| || ||||| || || |||| ||| |
Sbjct 64049 AGAAGACCGCCACTTATGACTTCCAAAAGCTTCACGAGGTCTGCCAAGTTGTCGTCAAGA 64108
Query 105150 ACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTA 105206
|| | || | |||| ||| || | ||||| || |||| || | || |
Sbjct 64109 ACTTGAATAAGATTATCGATGTCAACTACTACCCGGTTCCTGAG---GCAAGAAAGAGCA 64165
Query 105207 ATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TC 105263
|| | | ||| | || |||| |||||||||||| ||||| || |||| ||| | ||
Sbjct 64166 ATTTCCGTCACAGACCTATTGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTC 64225
Query 105264 TTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGA 105323
|| ||| | | || || ||| || || ||| | |||| | || || ||||
Sbjct 64226 TTCGTCTTC---CTTTCGAATCCCCGGAGGCCAAGCACCTCAACATCCAAATTTTCGAGA 64282
Query 105324 CCATGTATCACGCCGCTCTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATA 105381
|||| || ||||| ||| |||| | | || ||||||||| || || ||||||||||
Sbjct 64283 CCATTTACCACGCTGCT-TTGA-CTGCTTCCATGGAGTTGGCAAAGATTCATGGTCCATA 64340
Query 105382 TGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGG 105441
||| || | | | || || || || || | || | ||| |||| ||| ||||||| |
Sbjct 64341 TGAGACTTATCAAGGCTCGCCTGCCTCTAAGGGCGAGCTCCAATATGACATGTGGG-GTG 64399
Query 105442 TGAGACCAAGC-TTCACTACGACTGGG-AAGCTCTCAAGGAACGCATCAAGGAGAAGGGT 105499
| | ||| | | || | || |||| |||| | ||| ||| ||| | | |||
Sbjct 64400 TCACACCTACCGATCTTTGGGATTGGGCTAGCT-TGAAGCAACAGATCTCTCAACACGGT 64458
Query 105500 CTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGG 105558
| ||||||||| | ||| | ||||| |||||||||||| ||| |||| ||||||
Sbjct 64459 ATCCGTAACAGTTTGCTCGTCGCTCCTATGCCAACAGCCAGTACCAGTCAAATTCTTGGA 64518
Query 105559 TAATAATGAATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGG 105617
| ||| || ||||| || || || || | |||||||| ||| || | ||| || |
Sbjct 64519 T-TTAACGAGTGCTTCGAGCCATATACCTCCAACATCTACTCT-CGACGTGTCCTTGCTG 64576
Query 105618 GAGAGTTTGTGATTGTCAAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCT 105674
|||| || |||||||| || |||| |||| ||| || || || || |
Sbjct 64577 GAGAATTCCAAGTTGTCAACCCATGGCTTCTCAAGGAT---CTCGTCGATATGGGACTTT 64633
Query 105675 GGTCCAAGGATATGAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATT 105730
||||| | | |||||| | | ||| || ||| ||||| || || |||||| ||
Sbjct 64634 GGTCCGACAACATGAAGAACCGTATCATTGCTGA----TGGTGGATCAATCCAAAATGTT 64689
Query 105731 GTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAG--ATGA 105788
| || || ||| || ||| | ||| || |||||||| ||| | | |
Sbjct 64690 CCAAACATCCCGGCTGATATCAAGGCTCTTTACAAGACCGTTTGGGAGATCTCGCAACGT 64749
Query 105789 AGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA 105848
| | || | | ||||| || || |||||| |||||||||||| |||| ||||
Sbjct 64750 ACCA--TCGTCCAGATGGCTGCCGACCGTGGTGCATTCATTGATCAATCTCAATCAATGA 64807
Query 105849 ATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGA 105908
| || |||| | ||||| ||| ||| || | |||||| | | ||||
Sbjct 64808 ACATCCACATGAAGGACCCAACCATGGGTAAGATCACCAGTATGCATTTCGCAGGCTGGA 64867
Query 105909 AGAAGGGTCTCAAAACGGGGATGTATTACCTCCGATCTAAGGC 105951
|| ||||||||| || || ||||| || ||||| ||| |||
Sbjct 64868 AGCTGGGTCTCAAGACTGGAATGTACTATCTCCGTACTATGGC 64910
>seq908
Length=77775
Score = 113 bits (124), Expect = 5e-20
Identities = 155/214 (72%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTC 94790
|||||| || ||| | ||||| || ||||||||| | ||| | | |||| ||||
Sbjct 45075 AGTTCCCTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTC 45134
Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850
||||||| | || || | || || || ||||||||||||||||||| |||
Sbjct 45135 CA---CCTTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGG 45191
Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910
||| ||| | | || | ||| | ||||| || || |||||| | ||||| ||||||
Sbjct 45192 TTCTTTCGCCTCCATCTTCTGGTTGAAGAAACGTGGCCTCATGGCTGGTCTTACCTTCTC 45251
Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
||||||||| ||||| ||||| ||||| ||||||
Sbjct 45252 CAACGAGCTGATCTCCCGTGATGAGGGTCTCCAC 45285
>seq927
Length=373674
Score = 107 bits (118), Expect = 2e-18
Identities = 279/419 (67%), Gaps = 20/419 (5%)
Strand=Plus/Plus
Query 9606 CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCAT 9665
|| ||| |||||||||||||| || |||| || || | ||| ||| ||||||||||
Sbjct 175721 CAGTATTGAAACCATCCATCTCGGTTAAAATCTGATTGAGAGTGGCTTCTCGTTCATCAT 175780
Query 9666 T--CGCTGGCATACCA-CCAGC---ACTGCGTTGCTTTCCCACGGCATCAATCTCATCAA 9719
| | | || | | ||||| || || |||||| | ||||||||||| ||||
Sbjct 175781 TTCCACCACCAAATGAACCAGCTTTACCACGAGCCTTTCCGATTGCATCAATCTCGTCAA 175840
Query 9720 TGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGG 9779
|||||| || || || ||| | | || | | |||||||| || || | |
Sbjct 175841 TGAAGATAATACAAGGGGTATTCTTTCTGGCCATCGCGAAGAGATCTCGAACTCTGGAAG 175900
Query 9780 CGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CATTG-----GATGAAGG 9833
| || ||||| ||||||||||||||||| | ||||| || || || ||| |
Sbjct 175901 CACCAACACCGACAAACATCTCCACAAACT------CGGAACCACTGACGCTGAAGAAAG 175954
Query 9834 GGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTAC 9893
| ||| ||||| || || |||| || || | ||||||||| ||||| || ||
Sbjct 175955 GTACACCCGATTCTCCGGCTGTGGCCTTTGCTAGTAAAGTCTTACCGGTACCAGGTGGAC 176014
Query 9894 CCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCT 9953
| | |||| ||| ||||| || ||||| || || || | || ||||||| ||
Sbjct 176015 CAGAAAGGATGGCTCCTCGAGGGATCTTAGCACCCAATCTTTCGAATTGCTCAGGTGTCT 176074
Query 9954 TAAGAAAATCCAC-AATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011
| ||||| || |||| | | | |||| ||||| |||| || ||| |||||||
Sbjct 176075 TTAGAAATGAAACGAATTCCATAATCTCCATC-TTGGCTTCGTCCATACCCGCAACATC 176132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583248303637360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |