Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1428 136 1e-26 seq1406 132 1e-25 seq861 132 1e-25 seq900 109 2e-18 seq1483 107 6e-18 >seq1428 Length=201619 Score = 136 bits (150), Expect = 1e-26 Identities = 198/280 (71%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 378169 TTTCTTACAGTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGA 378228 |||| ||||| ||||||| || | || | ||| || | ||| || | ||| || || Sbjct 86272 TTTCGGACAGTTCCATCATATTTAGCAATGACATCCTCAAGTGCCTTGACAAGACGACGT 86213 Query 378229 GAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCC 378288 |||||||||||||| | ||| || ||||| ||||| || | ||| |||||||| || Sbjct 86212 TGAATATAACCAGTTTCAGCAGTCTTCACTGCGGTATCGATGAGACCTTCACGACCAGCC 86153 Query 378289 ATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAAT 378348 || || ||||| || || || || || || | |||| | | |||| | |||| |||| Sbjct 86152 ATGGCGTGGAAAAAGAACTCGGTTGGTGTTAACCCACGGAGATATGAGTTTTCAACAAAT 86093 Query 378349 CCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAAC 378408 ||||||| |||| || | ||||| ||||| ||||||| | ||| || | | || Sbjct 86092 CCTCTTGATTCTGGGGAGTAATCATCCTTTGTGAAATGAGGAAGTGTTCGGTATTTGAAT 86033 Query 378409 CCATATGGAATTCGTTTTCCATCAACATTCTGTTGACCAA 378448 || | ||||| || ||||| || ||| || ||||||| Sbjct 86032 CCGAAAGGAATACGCTTTCCTTCCACAGATTGCTGACCAA 85993 Score = 107 bits (118), Expect = 6e-18 Identities = 118/154 (77%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 377435 ATAATGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAA 377494 ||| ||| ||| || |||||| || ||||||||| | || |||||| || || | | Sbjct 87025 ATATTGAGAAT-TTCCTTCAAA-CGAGGCACACCAAGGGTGACATTC---TTCGAAGACA 86971 Query 377495 CACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCG 377554 |||| ||||| ||||||||||| || || | ||| |||| ||| || ||||| || || | Sbjct 86970 CACCTGCAAAATGGAAAGTATTGAGCGTCATTTGCGTAGCGGGTTCTCCAATAGATTGAG 86911 Query 377555 CTGCAATAACGCCAACCATTTCTCCAGGATTGAC 377588 | |||| || |||||||||||||| ||||| || Sbjct 86910 CAGCAAGGACTCCAACCATTTCTCCGGGATTAAC 86877 >seq1406 Length=252419 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | |||||| || ||||| ||||| || || || || Sbjct 215336 CATACCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTC 215277 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || ||||| ||||| || | ||| || || || || || || || || || ||||| Sbjct 215276 GGACAAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGG 215217 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||||||||| || | || ||||| || || | ||| || | || Sbjct 215216 TGGGATACCCTCCTTATCCTGAATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTC 215157 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||||||||| || || || || || || ||||| Sbjct 215156 AACCTCGAGAGTGATCGTCTTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106 Score = 123 bits (136), Expect = 8e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || || || || || ||||| || || || || | Sbjct 214829 TTTGCATACCGCCACGAAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGT 214770 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||||| || || || || || || || ||||| |||||||| | ||||||||||| Sbjct 214769 AATCAGATAGAGTACGTCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGCTGAT 214710 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || |||||||| || || ||||| || || | || || ||||| || | || || | Sbjct 214709 CTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCGGACG 214650 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || ||||| || | ||||| ||||| Sbjct 214649 ACTCCACCTCAAGGGTGATAGTCTTACCGGT 214619 Score = 123 bits (136), Expect = 8e-23 Identities = 168/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 140495 ACTAATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTG 140554 || ||||||| |||||||||||| | || ||||| | || |||||||| || ||||| Sbjct 215119 ACGAATATTTG-CATACCACCACGGAGTCGGAGAACCAAGTGTAGAGTAGATTCCTTTTG 215061 Query 140555 AATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACG 140614 ||||| || || || | || || || || |||||||| || ||||||||||| || | Sbjct 215060 GATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTCCCAGCAAAGATAAGTCT 215001 Query 140615 TTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGA 140674 || || ||||| || || || || || || ||||| || | || || || || || | Sbjct 215000 CTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGT 214941 Query 140675 ATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 ||| || | ||||| || || || | ||||| ||||| | || || |||| Sbjct 214940 ATCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACAA 214888 Score = 98.7 bits (108), Expect = 3e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| ||||| || |||||||| | ||| || ||||| || | ||| || || || || Sbjct 215525 CTCCTTTTGGATGTTATAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAA 215466 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 || | || || ||||| || || || || || |||||||| || || | || ||||| Sbjct 215465 AATCAATCGCTGTTGATCTGGTGGGATACCCTCCTTATCCTGGATCTTTGACTTGACATT 215406 Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 |||||| | || || | |||||||| | ||||| ||||| || || | || || || Sbjct 215405 ATCAATGGTGTCCGAAGACTCAACTTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAAC 215346 Query 140726 AAAAATCTGCAT 140737 || |||||||| Sbjct 215345 GAAGATCTGCAT 215334 >seq861 Length=344942 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 || ||||||| | || || |||||||| || ||||| || || || || || || || Sbjct 25580 CCTCCACGTAGACGTAAGACGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGAG 25521 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || ||||| |||||||| || || |||||||| ||||| |||||||| ||| Sbjct 25520 AGGGTGCGGCCGTCTTCGAGTTGTTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGA 25461 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 ||||| || || ||||| || || | ||| ||||||||||||| ||| | ||| || Sbjct 25460 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTATCAATCGTGTCACTCGATTCGACC 25401 Query 140691 TCAAGTGTAACTGTCTTTCCGGT 140713 || || || | ||||| || || Sbjct 25400 TCGAGGGTGATAGTCTTGCCCGT 25378 >seq900 Length=80126 Score = 109 bits (120), Expect = 2e-18 Identities = 673/1062 (63%), Gaps = 41/1062 (4%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||| ||||||| ||||||||||| || || |||| | ||||| || |||||| Sbjct 72314 GCAGTTGTTACTGTGCCAGCCTATTTCAACGACAACCAGAGACAAGCAACCAAGGATGCT 72255 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || || || || || | || | || || ||||| || ||||| || Sbjct 72254 GGTGTCATTGCCGGTTTGAACGTCCTCCGTATCGTCAACGAGCCCACCGCCGCAGCTATC 72195 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | || | | || | | || || | | ||| | ||| Sbjct 72194 GCCTACGGTCTTGACAA---GGTTGGCAAGGAGAGGCAAATCATTGTCTACGATCTCGGT 72138 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 || || || |||||||| || || || | ||||||| || |||| || ||| | Sbjct 72137 GGAGGAACCTTTGATGTTTCCCTCCTCTCTATTGAAGATGGTGTTTTCGAGGTTCTTTCT 72078 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 || |||||||| || ||| | ||||| || ||||| || | ||| || | || || Sbjct 72077 ACCGCTGGTGACACCCATTTGGGTGGTGAGGATTTCGACCAACGTATCATCAACCACTTC 72018 Query 349910 GTTAAAGAATTTAAGCGTCAAGCTAAA----ATTGATATTGGAGATAATC-CTAGAGCAA 349964 | ||||| | | |||| || ||||||| | | | | ||| | | Sbjct 72017 G-CCAAGAAGT---ACAACAAGGAGAACTCCGTTGATATCACCAAGGACCTCAAGA-CCA 71963 Query 349965 TGCGTCGCCTAAGAACTGCGTG----TGAACGTGCTAAGCGTTCCTTATCAT-CTACTAC 350019 || || || ||| ||||| |||| || |||||| || | || | | | | Sbjct 71962 TGGGTAAACT--GAA--GCGTGAGGCTGAAAAGGCCAAGCGTACCCTTTCTTCCCAAAAG 71907 Query 350020 CCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTAC 350079 | | || | ||||| || || || | ||||||| ||||||| || |||| Sbjct 71906 ACCACCCGC-ATTGAGATCGAAGCTTTCCACAATGGCAACGATTTCTCCGAGACTCTTAC 71848 Query 350080 ACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCA-ACAATGGATCCTGTGG 350138 ||||| ||| || ||||| ||||| ||| || || | || || | ||||| | Sbjct 71847 CCGTGCCAAGTTCGAGGAATTGAACATGGA-CTTGTTCAAGAAGACCTTGAAGCCTGTCG 71789 Query 350139 AAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGA--TTGATGAAGTAGTTTTAGT 350196 | | || | || ||||| || ||| | || ||| | || || | || || || Sbjct 71788 AGCAGGTTCTCAAGGATGC--CAAGGTCAAGAAGGGAGAAGTCGACGACATCGTCTTGGT 71731 Query 350197 TGGTGGTTCTACACGTATTCCAAAAGT--TCAACAGTTACTATCTGAGTTTTTTAATGGC 350254 |||||||||||| ||||||||||| || || ||| | || |||| || | ||| Sbjct 71730 TGGTGGTTCTACCCGTATTCCAAAGGTCGTCGACA--TGATAGAAGAGTACTTCAGTGG- 71674 Query 350255 AAAGAA-CCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCA 350313 |||||| |||| | ||||| || ||||| ||||| || | ||||| |||||||| Sbjct 71673 AAAGAAGGCTTCCAAGGGTATTAACCCTGATGAGGCTGTCGCTTTCGGTGCCGCTGTTCA 71614 Query 350314 GGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGT 350373 | | | | || || | | || | || || | | | || | || || Sbjct 71613 AGGTGGTGTCCTTTCCGGTGAGGAAGGT------ACTGGTGGTATTGTTCTCATGGACGT 71560 Query 350374 AACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAG 350433 | ||| | | ||||| | || || | || | || ||||| | || || || Sbjct 71559 CAACCCATTGACTCTTGGTATCGAGACCACCGGAGGTGTCATGACCAAGTTGATCCCAAG 71500 Query 350434 AAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCC 350493 ||| | | || || || |||| | ||| || || ||| ||||| ||||| Sbjct 71499 AAACACCGTCATCCCAACCCGCAAAGCCCAGATTTTCTCCACCGCTGCCGATAACCAGCC 71440 Query 350494 AGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACT 350553 || || || || || ||||| || ||| | || |||||||| || ||| |||| Sbjct 71439 AGTAGTCTTGATCCAGGTCTTTGAGGGAGAAAGAACTATGACTAAAGACAACAATCAACT 71380 Query 350554 TGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGT 350613 ||| | || || | | || ||||| ||| ||||||||||||| || || || Sbjct 71379 CGGAAAGTTCGAGCTTACCGGTATCCCACCTGCGCCACGAGGAGTTCCTCAAATCGAGGT 71320 Query 350614 CTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGC 350655 ||||||||| |||| | || || || ||||| |||||||| Sbjct 71319 CTCTTTCGAGCTTGACGCCAACGGAATCTTAAAGGTTACCGC 71278 >seq1483 Length=199378 Score = 107 bits (118), Expect = 6e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 ||||| || || ||||| || | || || ||||| || ||||| |||||||| ||||| Sbjct 28636 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 28695 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | |||||| || || || || || || || || ||||| || || | || ||||||||| Sbjct 28696 AAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTATCA 28755 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || | || || | |||||||| | ||||| ||||| || || || || || || || Sbjct 28756 ATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGAA 28814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515221124066342