Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq843 250 3e-61 seq908 125 8e-24 >seq843 Length=104768 Score = 250 bits (276), Expect = 3e-61 Identities = 1108/1729 (64%), Gaps = 49/1729 (3%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || || | ||||||||| || |||||||||||| |||||| || | |||||||| Sbjct 64904 GTACGGAGATAGTACATTCCAGTCTTGAGACCCAGCTTCCAGCCTGCGAAATGCATACTG 64845 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | ||| ||| | |||| || |||| |||||| | || || || || || ||| Sbjct 64844 GTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATG 64785 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 | ||||| |||||||| ||||| | || || | ||||| |||||||| | |||| Sbjct 64784 AATGCACCACGGTCGGCAGCCATCTGGACGATGGTACGTTGCGAGATCTCCCAAACGGTC 64725 Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTC---CCACCGGCT 78426 ||||| ||||| | || || |||||| | | | | | | ||||| | Sbjct 64724 TTGTAAAGAGCCTTGATATCAGCCGGGATGTTTGGAACATTTTGGATTGATCCACCATCA 64665 Query 78427 CGCACAATTTCATTCTTAAT-TTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGGAC 78485 | || ||||| || ||| || ||| | || | |||||| || Sbjct 64664 GCAATGATACGGTTCTTCATGTTGTCGGA-CCAAAGTCCCATATCGACGAGATCCTTGAG 64606 Query 78486 CAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGT 78545 || |||| | | ||| || || || ||| || || ||||||||||| Sbjct 64605 AAGCCATGGGTTGACAACTTGGAATTCTCCAGCAAGGACACGTCGAGAGTAGATGTTGGA 64546 Query 78546 CGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCAT 78605 || || |||||||| |||||| || | || || ||| ||| || ||||| Sbjct 64545 GGTATATGGCTCGAAGCACTCGTTAAATCCAAGAATTTGACTGGTACTGGCTGTTGGCAT 64486 Query 78606 GGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTT-----TAGG 78660 || ||||| || | | || || | ||| || ||||| ||| ||| Sbjct 64485 AGGAGCGACGAGCAAACTGTTACGGATACCGTGTTGAGAGATCTGTTGCTTCAAGCTAGC 64426 Query 78661 CCG-TCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGA 78719 || ||||||| || | | | || ||||||||||| ||| || |||| || Sbjct 64425 CCAATCCCAAAGATCGGTAGGTGTGACACCCCACATGTCATATTGGAGCTCGCCCTTAGA 64366 Query 78720 CGCCGGCGACCCCTTGA-ACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACT 78778 || ||||| || |||| | ||||| || | || | ||| || | || |||| Sbjct 64365 GGCAGGCGAGCC-TTGATAAGTCTCATATGGACCATGAATCTTTGCCAACTC-CATGGAA 64308 Query 78779 CGAG-CAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTG 78837 || || || |||||||| | | |||||| || ||||||| | |||| Sbjct 64307 GCAGTCAAAGCAGCGTGGTAAATGGTCTCGAAAATTTGGATGTTGAGGTGCTTGGCCTCC 64248 Query 78838 GTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATA 78897 | ||||| | ||| | || || |||| |||| || || || || || |||| | Sbjct 64247 GGGGATTCGAAAGGAAGACGAAGAGCCAAGAAGGCATCAGCAAGACCTTGAACACCGAGA 64188 Query 78898 GCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGA 78957 || || |||| ||| || | |||||||||| ||| | |||||| |||| | Sbjct 64187 GCAATAGGTCTGTGACGGAAATTGCTCTTTCTTGCCTCAGGAACCGGGTAGTAGTTGACA 64128 Query 78958 TCGATGACGCGGTTCAGGTTACGCGTGACGACC-CGAGTCA--CCTCGTACAATTTGGCG 79014 ||||| | |||| ||| | ||||||| | | || |||||| | || | Sbjct 64127 TCGATAATCTTATTCAAGTT---CTTGACGACAACTTGGCAGACCTCGTGAAGCTTTTGG 64071 Query 79015 AAATCAAAAT--GATTTCCTTTGATGAAAGTCGGTAGGCACAGC----GATGCCAGGTTG 79068 || ||| || | || | | || || | ||| || | ||| ||||||| ||| Sbjct 64070 AAGTCATAAGTGGCGGTCTTCTCATCAACATAGGTTGGGAGAGCAAGCGATGCCAAATTG 64011 Query 79069 CACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGAC 79128 || || || ||| || || | | ||||| |||||| |||||||| || || | Sbjct 64010 CAAACAGCGACCTCATCTGGTGCACAGTACTCGACGATTTCAGTGCACAAGTTGGAG--C 63953 Query 79129 TT--GATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACA 79186 || |||||| |||| ||||| ||||||||||| ||| || || |||||||| || Sbjct 63952 TTCGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCA 63893 Query 79187 TGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCC 79246 || | || | ||||||||| ||| || || | || ||| | | |||| Sbjct 63892 TGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGGATAGAGTACCAAAGCTTTTGGGCTT 63833 Query 79247 GGACAACCTTCTTGTACCGACCCTGTGC-----GAC--GTACGTCCGGTACAACTCGTTG 79299 || ||||| ||||||| ||| ||| ||| || |||||| | | | Sbjct 63832 TGATGC---TCTTG---CGACCCT-TGCCCTCAGACTCGTATTTCTCATACAACGCTTCG 63780 Query 79300 AAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAG 79359 || | || || |||||||||| || || || ||||||| |||||||||| |||| Sbjct 63779 AACTCGTCACCGTAGACATCGGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCAG 63720 Query 79360 TCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGG 79419 || | ||| ||||| || ||||||||| || || ||||| || || |||||| Sbjct 63719 TCGAGATTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGA 63660 Query 79420 TCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATG 79479 || ||| ||| | |||||| | || |||||| || || ||||| || || | | Sbjct 63659 TCACGGGCACGAACCTCCTCCTTTCCATGGTTCTTTCGGAGGTCGAGGAACTCGAAAACA 63600 Query 79480 TCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGG 79539 ||||||||||| ||||| || ||||||||||| | ||| |||||| || || || Sbjct 63599 TCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGTTACCACCTTGA 63540 Query 79540 TTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACG 79599 | || || | ||| |||||||||||||||| |||||| || ||||| |||| || | Sbjct 63539 TCAACATATCTGGCGGTGTTGTTGAAAACTCTGAGCATAGGAACGATTCCGTTGGAGTTT 63480 Query 79600 CCGTTCGTCCCGTTGATTCGTGTACCGCTCGC-CCGAATGTTCGAGCAGTGGATTCCGAT 79658 ||||| || ||| ||| | ||| |||| | || | | || || | || ||||| Sbjct 63479 CCGTTAGTACCGGCGATATAAGCGCCGGTCGCACGGATTCTGTGAACA-TTGAGACCGAT 63421 Query 79659 GCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGAT 79718 || || | ||| || || ||||| ||| | ||| ||||| || || || || Sbjct 63420 ACCACCAGCATTCTTTGAAATCATGGCGCAAATCTTTAACGTGTCGTAAATACCATCAAT 63361 Query 79719 CGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT-TGTTCGTACCGG 79777 ||| |||||||| ||| ||||||||| || | |||| | || | || || | Sbjct 63360 GCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGCCTGTGGT-GTGCCAG 63302 Query 79778 CGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCT 79837 | ||||||||| || | ||||| |||||| | || | ||||| | ||| |||| Sbjct 63301 CTGCGAAGAGGGTTGGGGAGGCGTGGGTGAAGTATTTGCTGGACATCAAGTTGTAGGTCT 63242 Query 79838 CCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 79886 | || | | || || || ||||| || |||||||| || ||||| Sbjct 63241 CGATGGCAGCCTCGATATCCTCACCGTGAATTCCGACCGCAACACGCAT 63193 Score = 197 bits (218), Expect = 2e-45 Identities = 410/603 (68%), Gaps = 8/603 (1%) Strand=Plus/Plus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| || |||||||| || || || || || || | | | |||||| ||| || Sbjct 63193 ATGCGTGTTGCGGTCGGAATTCACGGTGAGGATATCGAGGCTGCCATCGAGACCTACAAC 63252 Query 19178 CTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAA 19236 ||||| |||| || | |||||| ||||| | || ||||| ||| || || || | Sbjct 63253 TTGATGT-CCAGCAAATACTTCACCCACGCCTCCCCAACCCTCTTCGCAGCTGGCAC--A 63309 Query 19237 CAACCCGCAGA--TGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294 | || ||| | | || ||| ||||| | | |||||||| ||||||||||| || Sbjct 63310 CCACAGGCACAACTTTCATCCTGCTTCCTTATCGACATGAAGGAGGACAGCATTGATGGT 63369 Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354 || ||||| ||| | ||| ||||| || || ||| | || |||||||| || Sbjct 63370 ATTTACGACACGTTAAAGATTTGCGCCATGATTTCAAAGAATGCTGGTGGTATCGGTCTC 63429 Query 19355 CACTGCTCGAATA-TCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413 | || || | | |||| ||| || | ||| || || |||||| || | Sbjct 63430 AA-TGTTCACAGAATCCGTGCGACCGGCGCTTATATCGCCGGTACTAACGGAAACTCCAA 63488 Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473 ||| ||||| || |||||| | || ||||||||||| ||||| || || | || || || Sbjct 63489 CGGAATCGTTCCTATGCTCAGAGTTTTCAACAACACCGCCAGATATGTTGATCAAGGTGG 63548 Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533 ||| || || | |||||||||||||| |||||||||||||| || || | || Sbjct 63549 TAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCATGGCACGCCGATGTTTTCGA 63608 Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593 |||||||| || || |||||| || | |||||| | || || || |||||| Sbjct 63609 GTTCCTCGACCTCCGAAAGAACCATGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTA 63668 Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653 || | |||||||| || || |||||| || ||||| ||| | || ||| | Sbjct 63669 CGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAATCTCGACTGGACATT 63728 Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTT 19713 ||||||||| |||| || ||||| | |||| |||||||| || | |||| | | ||| Sbjct 63729 GATGTGCCCTAACGAGTGTCCTGGTTTGGCCGATGTCTACGGTGACGAGTTCGAAGCGTT 63788 Query 19714 GTA 19716 ||| Sbjct 63789 GTA 63791 >seq908 Length=77775 Score = 125 bits (138), Expect = 8e-24 Identities = 306/455 (67%), Gaps = 18/455 (4%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| |||||||| | || || || || || || ||||||||| ||| || ||| Sbjct 45139 TTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTC 45198 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 | || |||||| | || || |||||||||||| | || || | |||||||||||| Sbjct 45199 GCCTCCATCTTCTGGTTGAAGAAACGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAG 45258 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTA 60152 ||||| ||||| || ||||| ||||| || || ||| || | ||| || | || | Sbjct 45259 CTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCA-TG-CCTTCTCTT--CTCCCA 45314 Query 60153 TTGGAAAAAT-GCCCTTCCAAGGATATTCACAAGATTGT--TCAGTG-GGCTTGTGAAGT 60208 || ||| || |||| ||||| | | || || ||| | |||| ||| | Sbjct 45315 TTTGAAGCATCGCCCAAGCAAGGCTGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGAT 45374 Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268 ||| |||||| | || || || ||||| || ||| | || ||| |||| Sbjct 45375 TGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCACTTCTCGGCATGAACGCCAACCT 45434 Query 60269 AATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATGGCC--CAGTTTGGAGAA 60323 |||| ||| |||||| |||| ||||| || || |||| | || | | ||||| Sbjct 45435 GATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTCCTCCTTTCCCTCGGCAATGAGAA 45494 Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 || ||||| || ||||| ||||||| ||||||| |||||| | | || Sbjct 45495 GG-----TTTACAAGGTTGCCAACCCATTCGACTTTATGGAGAACATCTCCCTTGCCGGA 45549 Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||| |||||||| || | ||||| Sbjct 45550 AAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTA 45584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548513047856160