Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq843 221 1e-52 seq1472 98.7 1e-15 seq908 96.9 4e-15 >seq843 Length=104768 Score = 221 bits (244), Expect = 1e-52 Identities = 509/757 (67%), Gaps = 16/757 (2%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || | || || |||||||| || | | || | ||||| ||| || Sbjct 63193 ATGCGTGTTGCGGTCGGAATTCACGGTGAGGATATCGAGGCTGCCATCGAGACCTACAAC 63252 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 || ||| | || ||||| || |||||| | |||||||| ||| ||||| || Sbjct 63253 TTGATGTCCAGCAAATACTTCACCCACGCCTCCCCAACCCTCTTCGCAGCTGGCACACCA 63312 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || | || | || ||||||||| | | |||||||| ||| || || || || Sbjct 63313 CAGGCACAACTTTCATCCTGCTTCCTTATCGACATGAAGGAGGACAGCATTGATGGTATT 63372 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| ||| | ||| || ||| || || ||| | |||||||||||| || | Sbjct 63373 TACGACACGTTAAAGATTTGCGCCATGATTTCAAAGAATGCTGGTGGTATCGGTCTCAA- 63431 Query 53435 TGCTC---GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 || || ||| ||||||||| |||| | ||| || || ||||| | || | Sbjct 63432 TGTTCACAGAA--TCCGTGCGACCGGCGCTTATATCGCCGGTACTAACGGAAACTCCAAC 63489 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 |||||||| ||||||||| | || ||||||||||| ||| | || || | || |||||| Sbjct 63490 GGAATCGTTCCTATGCTCAGAGTTTTCAACAACACCGCCAGATATGTTGATCAAGGTGGT 63549 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || | |||||||||||||| ||||| ||||||||||| || | ||| Sbjct 63550 AACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCATGGCACGCCGATGTTTTCGAG 63609 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TAC 53670 || ||||| || || ||| || || | || ||| | || |||||| || || ||| Sbjct 63610 TTCCTCGACCTCCGAAAGAACCATGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTAC 63669 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 ||||| |||||||| || ||||||||| | || || ||| | || ||| | Sbjct 63670 -GCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAATCTCGACTGGACATT 63728 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 ||||||||| |||||||| || || | | |||||||||||| ||||| | | | | Sbjct 63729 GATGTGCCCTAACGAGTGTCCTGGTTTGGCCGATGTCTACGGTGACGAGTTCGAAGCGTT 63788 Query 53791 GTATCGGACGTACGCAGT-TCAGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTGAGG 53846 |||| || |||| ||| | ||||| | ||||| | |||| || | || Sbjct 63789 GTATGAGAAATACG-AGTCTGAGGGCAAGGGTCGCAAGAGCA---TCAAAGCCCAAAAGC 63844 Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906 | ||| | | ||||| || || ||||| |||| || | |||| ||||||| Sbjct 63845 TTTGGTACTCTATCCTTGAGGCTCAAACTGAGACCGGAAACCCTTTCATGCTTTACAAGG 63904 Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 || | |||| ||||||||||| ||||| |||| Sbjct 63905 ATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTCGG 63941 >seq1472 Length=199535 Score = 98.7 bits (108), Expect = 1e-15 Identities = 296/446 (66%), Gaps = 12/446 (3%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || |||||||| || || |||||||| | |||| ||| ||||||| ||| ||| | | Sbjct 180174 CCAGTACCGATTCCATCAGCACCGTTAATAAGAACCATTGGCACAACAGGACAGTACATC 180233 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCA-AAACGGAATTGTCA-GC-C 151992 | ||||| | || | ||||| |||| ||| ||| ||| || | ||| || | Sbjct 180234 ACTGGCTCAATCTTCTTTCCGTCGTCCA-CACTGTGGTCATAAATGGGCTCATCAAGCAC 180292 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 || ||||| |||| | | || || | ||| || || || || | || ||| Sbjct 180293 TGA--GAATACTCGTCTCGCGAACGGCGACAGTCTCGTAAAAATATAACGAGGACTTGCC 180350 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 ||||| | || ||||| || || | ||||| | |||| |||||||| || | Sbjct 180351 GCATCAGTACCTCCTGCGAGACGACTACCAAAATTTCCACTTGGCTCGAGACAATTTATA 180410 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTC-ACAATCGTGCCCTGCAGACTCGCTTC 152171 ||||| | || |||||||| || || || | | | |||||| |||| | ||||| Sbjct 180411 TTGTTAGATCCGACGAAATTTTGCGC-AAGTCCGATAATCGTCTGATGCATAGAAGCTTC 180469 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 ||||||||| || || || | || | || |||||| | | || | |||||||||| || Sbjct 180470 ACCGTGGTGGTAAGCAGTGTTTTCTGAGACGTATCCACCGAGCTCCACCACCTTCATATC 180529 Query 152232 CGTCG--TCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 ||| ||||| ||| | ||| || | || ||||| || || ||||| || Sbjct 180530 --TCGAACAAGGTTGCGCTTAAAACAAGCAAACATGACCTTTCGTTGTCCAGGTTTGAAC 180587 Query 152290 CCGTCCACCACGTGAGGAATCGAACG 152315 ||||| | ||| ||| || ||||| Sbjct 180588 CCGTCGATCACAGAAGGGATAGAACG 180613 >seq908 Length=77775 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| || || || || | ||| |||| ||| || ||||| ||||||||||| |||||| Sbjct 45263 ATCAGCTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGTTTCTTCAACCAGAAGATG 45204 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | ||| ||||||||||||||||| || || ||| || ||||| ||||| ||||| Sbjct 45203 GAGGCGAAAGAACCACTGAAGAAGATACCCTCAACAGCGGCGAAGGCAACAAGACGTTGG 45144 Query 74904 GCGAACGGTG 74913 || || |||| Sbjct 45143 GC-AAAGGTG 45135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547204275897200