Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq843 197 2e-45 seq1406 179 4e-40 seq861 138 1e-27 seq1483 125 8e-24 seq908 89.7 6e-13 >seq843 Length=104768 Score = 197 bits (218), Expect = 2e-45 Identities = 566/859 (66%), Gaps = 25/859 (3%) Strand=Plus/Minus Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCC 80961 || || |||| |||||| || || ||||| || | || | ||| |||||||||||| Sbjct 64025 AGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCA-CAGTA--CTCGACGATTTCA 63969 Query 80962 GTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGC 81019 |||||||| || || ||| || ||||| || || || ||||| ||| ||||| Sbjct 63968 GTGCACAAGTTGGAG--CTTCGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGC 63911 Query 81020 AAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGT 81079 |||| |||||||| |||| | ||| | |||||||| || | || ||||| | || Sbjct 63910 AAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGGATAGAGT 63851 Query 81080 CCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGT 81139 ||||| || | || |||| |||||| ||||| || | | | || || | | Sbjct 63850 ACCAAAGCTTTTGGGCTTTGATGCTCTTGCGACCCTTGCCCTCAGACTCGTATTTCTCAT 63791 Query 81140 AAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199 | | ||||||| | |||||| | || | | | || |||||||||||||||| Sbjct 63790 ACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACACTCGTTAGGGCACA 63731 Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259 ||| ||||||| | || || ||| ||||||||| || || |||||||| | Sbjct 63730 TCAATGTCCAGTCGAGATTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAG 63671 Query 81260 CGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAA 81319 || ||| || || ||| || ||||||| | || ||||| || | ||||| | Sbjct 63670 CGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTCTTTCGGAGGTCGAGGA 63611 Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGC 81373 | || | | || || ||||||||||| || || | ||||| | || | |||| Sbjct 63610 ACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGT 63551 Query 81374 GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433 | ||||| || | || || | ||| || ||| || || | | |||||| | || Sbjct 63550 TA---CCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTGAGCATAGGAACGA 63494 Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCT 81491 | || | || | ||||| ||||| ||||| | || | || || | | || Sbjct 63493 TTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCACGGATTCTGTGAA 63434 Query 81492 GATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTC 81551 |||| |||||||| ||||| | |||||||||| || || || | || || Sbjct 63433 CATTG--AGACCGATACCACCAGCATTCTTTGAAATCATGGCGCAAATCTTTAACGTGTC 63376 Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611 ||||| || || ||||| || | |||||||| | | ||| ||| ||| | || | Sbjct 63375 GTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGC 63316 Query 81612 GCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACAT 81671 | || ||| || ||| || ||||||| ||||| |||| || | | ||||| Sbjct 63315 CTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAAGTATTTGCTGGACAT 63256 Query 81672 CAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730 || || ||||| || || | || | | ||||| ||||||||||| |||| || |||| Sbjct 63255 CAAGTTGTAGGTCTCGATGGCAGCCTCG-ATATCCTCACCGTGAATTCCGACCGCAACAC 63197 Query 81731 GCATAAACATGTACTGGGG 81749 |||||| ||| | ||| || Sbjct 63196 GCATAATCATATGCTGTGG 63178 >seq1406 Length=252419 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 215106 ATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGTCTTCA 215165 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||| | || |||||||| |||||||| || || || ||||| Sbjct 215166 GATACTATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 215225 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || |||||| | ||||||| || ||| | | ||||| || Sbjct 215226 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAC 215285 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| |||||| | ||| | |||||||| ||||| Sbjct 215286 ATCCAAAAGGAGTCCACACTTCATTTGGTCCTTCGTCTTCGTGGTGG 215332 Score = 149 bits (164), Expect = 7e-31 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475 |||||||||| | ||||||||||| || || || ||||||||||| |||| || | Sbjct 214888 TTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACTATCG 214947 Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535 || | ||| | || ||||| ||||||||||| || || || ||||| ||| | || | Sbjct 214948 ACAACGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAGAGACTTA 215007 Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 | |||||||| |||||||| ||||| | || ||||| | ||||| ||| ||||||||| Sbjct 215008 TCTTTGCTGGGAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAATATCCAAAAGG 215067 Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || | || | || || || ||||| Sbjct 215068 AATCTACTCTACACTTGGTTCTCCGACTCCGTGGTGG 215104 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| |||||||| || |||||||| ||||| || | ||| | || | ||| | Sbjct 214619 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACCATCGATAACGTCAAGTCC 214678 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||||||||| ||||| ||||| ||| | || ||||| || ||| Sbjct 214679 AAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGAAAG 214738 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | ||||| ||| | || || || |||| ||||| ||||| || || Sbjct 214739 CAGCTCGAGGACGGACGTACTCTATCTGATTACAACATCCAGAAGGAGTCCACCCTCCAC 214798 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | |||||||| || || Sbjct 214799 CTGGTCCTCCGTCTTCGTGGCGG 214821 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||||||||| | || |||||||| Sbjct 215334 ATGCAGATCTTCGTTAAGACTTTGACGGGCAAGACTATTACATTAGAAGTTGAGTCTTCG 215393 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| | || || ||||| |||||||| || || ||||| || Sbjct 215394 GACACCATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATCCCACCAGATCAA 215453 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | ||||| || || |||||| | ||||||| ||||| || ||| || ||||| Sbjct 215454 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGC-GATTATAA 215512 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||||||||| |||| | || | || | || || || || |||||| Sbjct 215513 CATCCAAAAGGAGAGCACTTTGCACTTGGTGCTTCGCCTGCGTGGAGGACAA 215564 >seq861 Length=344942 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || ||||||||||| || || ||||| || || |||| | |||| ||| | || | Sbjct 25378 ACGGGCAAGACTATCACCCTCGAGGTCGAATCGAGTGACACGATTGATAATGTCAAATCC 25437 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||||||||| || || || || || ||||| || || || || Sbjct 25438 AAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAA 25497 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 |||||||| || | || ||||| | ||||| || |||| ||||| || || |||||| Sbjct 25498 CAACTCGAAGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCAACCCTTCAT 25557 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||||| ||||| || || ||| Sbjct 25558 CTCGTCTTACGTCTACGTGGAGGA 25581 >seq1483 Length=199378 Score = 125 bits (138), Expect = 8e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| ||||| || ||||| ||||| | || |||||||| || | || Sbjct 28815 CTTCGTCAAGACCCTTACGGGTAAGACCATTACATTGGAAGTTGAGTCTTCGGACACAAT 28756 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| | ||| | || || |||||||||||||| || || || ||||| || ||| | Sbjct 28755 TGATAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAACAACGTTT 28696 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||| |||||||||||||||| || || || |||| || || ||||||| Sbjct 28695 GATCTTCGCTGGAAAGCAACTCGAGGATGGACGCACTCTTTCAGATTACAACATCCAAAA 28636 Query 27594 GG 27595 || Sbjct 28635 GG 28634 >seq908 Length=77775 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGAAT--CGTGG-GTCGTCGTTTGGTCAGCGT 64719 || |||||||| ||||| |||| ||||| | | || ||| | |||| || ||| Sbjct 45091 AAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTCCACCTTTGCCCAACGT 45150 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || | || || ||| ||| || || || ||||| ||| || ||| || || ||| Sbjct 45151 CTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCCTCCATCTTC 45210 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||| | || || || ||||| ||| | ||||| | || || |||||||||||||| || Sbjct 45211 TGGTTGAAGAAACGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGCTGATCTCCCGT 45270 Query 64840 GACGAGGGGCTCCAC 64854 || ||||| |||||| Sbjct 45271 GATGAGGGTCTCCAC 45285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298181099680