Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq843 197 2e-45
seq1406 179 4e-40
seq861 138 1e-27
seq1483 125 8e-24
seq908 89.7 6e-13
>seq843
Length=104768
Score = 197 bits (218), Expect = 2e-45
Identities = 566/859 (66%), Gaps = 25/859 (3%)
Strand=Plus/Minus
Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCC 80961
|| || |||| |||||| || || ||||| || | || | ||| ||||||||||||
Sbjct 64025 AGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCA-CAGTA--CTCGACGATTTCA 63969
Query 80962 GTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGC 81019
|||||||| || || ||| || ||||| || || || ||||| ||| |||||
Sbjct 63968 GTGCACAAGTTGGAG--CTTCGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGC 63911
Query 81020 AAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGT 81079
|||| |||||||| |||| | ||| | |||||||| || | || ||||| | ||
Sbjct 63910 AAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGGATAGAGT 63851
Query 81080 CCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGT 81139
||||| || | || |||| |||||| ||||| || | | | || || | |
Sbjct 63850 ACCAAAGCTTTTGGGCTTTGATGCTCTTGCGACCCTTGCCCTCAGACTCGTATTTCTCAT 63791
Query 81140 AAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199
| | ||||||| | |||||| | || | | | || ||||||||||||||||
Sbjct 63790 ACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACACTCGTTAGGGCACA 63731
Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259
||| ||||||| | || || ||| ||||||||| || || |||||||| |
Sbjct 63730 TCAATGTCCAGTCGAGATTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAG 63671
Query 81260 CGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAA 81319
|| ||| || || ||| || ||||||| | || ||||| || | ||||| |
Sbjct 63670 CGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTCTTTCGGAGGTCGAGGA 63611
Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGC 81373
| || | | || || ||||||||||| || || | ||||| | || | ||||
Sbjct 63610 ACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGT 63551
Query 81374 GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433
| ||||| || | || || | ||| || ||| || || | | |||||| | ||
Sbjct 63550 TA---CCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTGAGCATAGGAACGA 63494
Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCT 81491
| || | || | ||||| ||||| ||||| | || | || || | | ||
Sbjct 63493 TTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCACGGATTCTGTGAA 63434
Query 81492 GATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTC 81551
|||| |||||||| ||||| | |||||||||| || || || | || ||
Sbjct 63433 CATTG--AGACCGATACCACCAGCATTCTTTGAAATCATGGCGCAAATCTTTAACGTGTC 63376
Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611
||||| || || ||||| || | |||||||| | | ||| ||| ||| | || |
Sbjct 63375 GTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGC 63316
Query 81612 GCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACAT 81671
| || ||| || ||| || ||||||| ||||| |||| || | | |||||
Sbjct 63315 CTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAAGTATTTGCTGGACAT 63256
Query 81672 CAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730
|| || ||||| || || | || | | ||||| ||||||||||| |||| || ||||
Sbjct 63255 CAAGTTGTAGGTCTCGATGGCAGCCTCG-ATATCCTCACCGTGAATTCCGACCGCAACAC 63197
Query 81731 GCATAAACATGTACTGGGG 81749
|||||| ||| | ||| ||
Sbjct 63196 GCATAATCATATGCTGTGG 63178
>seq1406
Length=252419
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || |||||||| || ||||| ||||| || ||||| |||||||||||
Sbjct 215106 ATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGTCTTCA 215165
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| ||||| | || |||||||| |||||||| || || || |||||
Sbjct 215166 GATACTATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 215225
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || ||||| || || |||||| | ||||||| || ||| | | ||||| ||
Sbjct 215226 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAC 215285
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| ||||| |||||| | ||| | |||||||| |||||
Sbjct 215286 ATCCAAAAGGAGTCCACACTTCATTTGGTCCTTCGTCTTCGTGGTGG 215332
Score = 149 bits (164), Expect = 7e-31
Identities = 163/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475
|||||||||| | ||||||||||| || || || ||||||||||| |||| || |
Sbjct 214888 TTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACTATCG 214947
Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535
|| | ||| | || ||||| ||||||||||| || || || ||||| ||| | || |
Sbjct 214948 ACAACGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAGAGACTTA 215007
Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595
| |||||||| |||||||| ||||| | || ||||| | ||||| ||| |||||||||
Sbjct 215008 TCTTTGCTGGGAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAATATCCAAAAGG 215067
Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || | || | || || || |||||
Sbjct 215068 AATCTACTCTACACTTGGTTCTCCGACTCCGTGGTGG 215104
Score = 145 bits (160), Expect = 9e-30
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||| |||||||| || |||||||| ||||| || | ||| | || | ||| |
Sbjct 214619 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACCATCGATAACGTCAAGTCC 214678
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||||||||| ||||| ||||| ||| | || ||||| || |||
Sbjct 214679 AAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGAAAG 214738
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||| | ||||| ||| | || || || |||| ||||| ||||| || ||
Sbjct 214739 CAGCTCGAGGACGGACGTACTCTATCTGATTACAACATCCAGAAGGAGTCCACCCTCCAC 214798
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | |||||||| || ||
Sbjct 214799 CTGGTCCTCCGTCTTCGTGGCGG 214821
Score = 132 bits (146), Expect = 5e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| | || |||||||||||||| | || ||||||||
Sbjct 215334 ATGCAGATCTTCGTTAAGACTTTGACGGGCAAGACTATTACATTAGAAGTTGAGTCTTCG 215393
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||| | || || ||||| |||||||| || || ||||| ||
Sbjct 215394 GACACCATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATCCCACCAGATCAA 215453
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| | ||||| || || |||||| | ||||||| ||||| || ||| || |||||
Sbjct 215454 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGC-GATTATAA 215512
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
|||||||||| |||| | || | || | || || || || ||||||
Sbjct 215513 CATCCAAAAGGAGAGCACTTTGCACTTGGTGCTTCGCCTGCGTGGAGGACAA 215564
>seq861
Length=344942
Score = 138 bits (152), Expect = 1e-27
Identities = 153/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| ||||||||||| || || ||||| || || |||| | |||| ||| | || |
Sbjct 25378 ACGGGCAAGACTATCACCCTCGAGGTCGAATCGAGTGACACGATTGATAATGTCAAATCC 25437
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||||||||| || || || || || ||||| || || || ||
Sbjct 25438 AAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAA 25497
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|||||||| || | || ||||| | ||||| || |||| ||||| || || ||||||
Sbjct 25498 CAACTCGAAGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCAACCCTTCAT 25557
Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633
|| ||||| ||||| || || |||
Sbjct 25558 CTCGTCTTACGTCTACGTGGAGGA 25581
>seq1483
Length=199378
Score = 125 bits (138), Expect = 8e-24
Identities = 137/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| ||||| || ||||| ||||| | || |||||||| || | ||
Sbjct 28815 CTTCGTCAAGACCCTTACGGGTAAGACCATTACATTGGAAGTTGAGTCTTCGGACACAAT 28756
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
|| ||| | ||| | || || |||||||||||||| || || || ||||| || ||| |
Sbjct 28755 TGATAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAACAACGTTT 28696
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || ||||| |||||||||||||||| || || || |||| || || |||||||
Sbjct 28695 GATCTTCGCTGGAAAGCAACTCGAGGATGGACGCACTCTTTCAGATTACAACATCCAAAA 28636
Query 27594 GG 27595
||
Sbjct 28635 GG 28634
>seq908
Length=77775
Score = 89.7 bits (98), Expect = 6e-13
Identities = 138/195 (71%), Gaps = 3/195 (2%)
Strand=Plus/Plus
Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGAAT--CGTGG-GTCGTCGTTTGGTCAGCGT 64719
|| |||||||| ||||| |||| ||||| | | || ||| | |||| || |||
Sbjct 45091 AAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTCCACCTTTGCCCAACGT 45150
Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779
|| | || || ||| ||| || || || ||||| ||| || ||| || || |||
Sbjct 45151 CTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCCTCCATCTTC 45210
Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839
||| | || || || ||||| ||| | ||||| | || || |||||||||||||| ||
Sbjct 45211 TGGTTGAAGAAACGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGCTGATCTCCCGT 45270
Query 64840 GACGAGGGGCTCCAC 64854
|| ||||| ||||||
Sbjct 45271 GATGAGGGTCTCCAC 45285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570298181099680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |