Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 100 2e-16
seq1483 91.5 9e-14
seq861 89.7 3e-13
>seq1406
Length=252419
Score = 100 bits (110), Expect = 2e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||| | |||| ||||| ||| |||||| || ||||| ||||| ||
Sbjct 214821 CCGCCACGAAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAT 214762
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| || || || || |||||||| || ||||| || || || || ||
Sbjct 214761 AGAGTACGTCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 214702
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| |||| || | || ||| || || ||||| ||||||
Sbjct 214701 ATTCCCTCCTTGTCCTGGATC-TTGGACTTGACGTTATCGATGGTGTCGGACGACTCCAC 214643
Query 34659 TTCCACGGTTATCGTTTTACCGGT 34682
|| | ||| || || ||||||||
Sbjct 214642 CTCAAGGGTGATAGTCTTACCGGT 214619
Score = 100 bits (110), Expect = 2e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | |||||| || | ||||||||||||||| ||||||||||| ||||| ||
Sbjct 215551 AGGCGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCTGAGTGTACGG 215492
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | ||| || ||||| || || || |||||||| || || || | ||||||
Sbjct 215491 CCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGGATACCCTCC 215432
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| || |||| |||| || || || ||| ||||| ||| ||||| | ||
Sbjct 215431 TTATCCTGGATC-TTTGACTTGACATTATCAATGGTGTCCGAAGACTCAACTTCTAATGT 215373
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || || || || || || ||||||||
Sbjct 215372 AATAGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334
Score = 82.4 bits (90), Expect = 5e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| || ||||| |||||||| || || || || ||||| || || |||| |||
Sbjct 215086 ACCAAGTGTAGAGTAGATTCCTTTTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCA 215027
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
||||| || || ||||| || | | ||||||||| || || | ||||||||||||
Sbjct 215026 AGTTGCTTCCCAGCAAAGATAAGTCTCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGA 214967
Query 34618 ATCTT 34622
|||||
Sbjct 214966 ATCTT 214962
>seq1483
Length=199378
Score = 91.5 bits (100), Expect = 9e-14
Identities = 122/167 (73%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576
||||||| ||||| ||||||||||| || || | || || ||||| || || || || |
Sbjct 28634 CCTTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGA 28693
Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA 34636
| ||||| ||||||||||| || | ||||||||||| |||| || | || || ||
Sbjct 28694 TCAAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATC-TTGGACTTGACATTA 28752
Query 34637 -AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
||||||||| ||| ||||||| || || || ||||| ||
Sbjct 28753 TCAATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGT 28799
>seq861
Length=344942
Score = 89.7 bits (98), Expect = 3e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| || || | ||| || || |||||| || ||||| || || || || || ||
Sbjct 25571 AGACGTAAGACGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGG 25512
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| |||||||| ||||| || |||| || ||||| || || || | |||||||
Sbjct 25511 CCGTCTTCGAGTTGTTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGAATTCCCTCC 25452
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 25451 TTGTCCTGGATCTT 25438
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314723025495362
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |