Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1406 122 8e-23 seq861 114 1e-20 seq1483 84.2 2e-11 >seq1406 Length=252419 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| |||||| ||||||| | ||||| || | || Sbjct 215334 ATGCAGATCTTCGTTAAGACTTTGACGGGCAAGACTATTACATTAGAAGTTGAGTCTTCG 215393 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||| || || || || || || || ||||| |||||| Sbjct 215394 GACACCATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATCCCACCAGATCAA 215453 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||||||| |||||||| || | || | |||||| ||| Sbjct 215454 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTATAAC 215513 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||| || || || ||||| | || |||| || || Sbjct 215514 ATCCAAAAGGAGAGCACTTTGCACTTGGTGCTTCGCCTGCGTGGAGG 215560 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || || || || ||||| ||| | || ||||| || || || | || Sbjct 215106 ATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGTCTTCA 215165 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||| || || || || || ||||| || ||| Sbjct 215166 GATACTATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 215225 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| |||||||| || | ||| | ||||| |||||| Sbjct 215226 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAC 215285 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | |||||||| | ||| | || ||||| || Sbjct 215286 ATCCAAAAGGAGTCCACACTTCATTTGGTCCTTCGTCTTCGTGGTGGTAT 215335 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26998 TTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTG 27057 |||| || || ||||||||||| | || || || || || || | || || | || | Sbjct 214888 TTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACTATCG 214947 Query 27058 AGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAA 27117 | | ||||| || ||||||||||| || ||||| ||||| || |||||| | | | Sbjct 214948 ACAACGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAGAGACTTA 215007 Query 27118 TATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGG 27177 | | || || || ||| | || ||| | ||| |||| || ||||| || ||||||| Sbjct 215008 TCTTTGCTGGGAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAATATCCAAAAGG 215067 Query 27178 AGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || || |||| |||||| | || | || ||||| || Sbjct 215068 AATCTACTCTACACTTGGTTCTCCGACTCCGTGGTGGTAT 215107 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||| ||| |||| || ||||| ||||| |||||||| | || || | ||||| Sbjct 214619 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACCATCGATAACGTCAAGTCC 214678 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| || || || || || ||||| || ||||| || | ||||| || Sbjct 214679 AAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGAAAG 214738 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| | || | || ||||||||||| || |||||||| ||| | || Sbjct 214739 CAGCTCGAGGACGGACGTACTCTATCTGATTACAACATCCAGAAGGAGTCCACCCTCCAC 214798 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| | ||| | || || || || Sbjct 214799 CTGGTCCTCCGTCTTCGTGGCGGTAT 214824 >seq861 Length=344942 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || |||||| |||| || || || || ||| || ||| ||||||| | |||||| Sbjct 25378 ACGGGCAAGACTATCACCCTCGAGGTCGAATCGAGTGACACGATTGATAATGTCAAATCC 25437 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| || || || || || |||||||| || |||| | |||||||||| Sbjct 25438 AAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAA 25497 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||| | |||||| | ||| | || || |||||||| || |||||||| ||| | ||| Sbjct 25498 CAACTCGAAGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCAACCCTTCAT 25557 Query 27192 TTGGTTTTGCGTTTGCGGGGTGG 27214 | || || ||| | || || || Sbjct 25558 CTCGTCTTACGTCTACGTGGAGG 25580 >seq1483 Length=199378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || || || || ||| | ||||| | ||||| || | || ||| | ||| Sbjct 28814 TTCGTCAAGACCCTTACGGGTAAGACCATTACATTGGAAGTTGAGTCTTCGGACACAATT 28755 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || || ||||| || ||||| ||||| || ||||| ||||| Sbjct 28754 GATAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAACAACGTTTG 28695 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | ||| || || ||| | || || | || |||| ||||||||||| |||||| Sbjct 28694 ATCTTCGCTGGAAAGCAACTCGAGGATGGACGCACTCTTTCAGATTACAACATCCAAAAG 28635 Query 27177 G 27177 | Sbjct 28634 G 28634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434909081873280