Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 122 8e-23
seq861 114 1e-20
seq1483 84.2 2e-11
>seq1406
Length=252419
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || ||| |||| |||||| ||||||| | ||||| || | ||
Sbjct 215334 ATGCAGATCTTCGTTAAGACTTTGACGGGCAAGACTATTACATTAGAAGTTGAGTCTTCG 215393
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | ||||| ||| || || || || || || || ||||| ||||||
Sbjct 215394 GACACCATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATCCCACCAGATCAA 215453
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | ||||||||| |||||||| || | || | |||||| |||
Sbjct 215454 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTATAAC 215513
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| ||||||||| || || || ||||| | || |||| || ||
Sbjct 215514 ATCCAAAAGGAGAGCACTTTGCACTTGGTGCTTCGCCTGCGTGGAGG 215560
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| ||||| || || || || ||||| ||| | || ||||| || || || | ||
Sbjct 215106 ATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGTCTTCA 215165
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || || || ||||| || || || || || ||||| || |||
Sbjct 215166 GATACTATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 215225
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| ||||| |||||||| || | ||| | ||||| ||||||
Sbjct 215226 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAC 215285
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| || | |||||||| | ||| | || ||||| ||
Sbjct 215286 ATCCAAAAGGAGTCCACACTTCATTTGGTCCTTCGTCTTCGTGGTGGTAT 215335
Score = 95.1 bits (104), Expect = 1e-14
Identities = 153/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 26998 TTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTG 27057
|||| || || ||||||||||| | || || || || || || | || || | || |
Sbjct 214888 TTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACTATCG 214947
Query 27058 AGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAA 27117
| | ||||| || ||||||||||| || ||||| ||||| || |||||| | | |
Sbjct 214948 ACAACGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAGAGACTTA 215007
Query 27118 TATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGG 27177
| | || || || ||| | || ||| | ||| |||| || ||||| || |||||||
Sbjct 215008 TCTTTGCTGGGAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAATATCCAAAAGG 215067
Query 27178 AGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| || || |||| |||||| | || | || ||||| ||
Sbjct 215068 AATCTACTCTACACTTGGTTCTCCGACTCCGTGGTGGTAT 215107
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071
||||| ||| |||| || ||||| ||||| |||||||| | || || | |||||
Sbjct 214619 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACCATCGATAACGTCAAGTCC 214678
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| || || ||||| || || || || || ||||| || ||||| || | ||||| ||
Sbjct 214679 AAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGAAAG 214738
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
|| | || ||| | || | || ||||||||||| || |||||||| ||| | ||
Sbjct 214739 CAGCTCGAGGACGGACGTACTCTATCTGATTACAACATCCAGAAGGAGTCCACCCTCCAC 214798
Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||| | ||| | || || || ||
Sbjct 214799 CTGGTCCTCCGTCTTCGTGGCGGTAT 214824
>seq861
Length=344942
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071
|| |||||| |||| || || || || ||| || ||| ||||||| | ||||||
Sbjct 25378 ACGGGCAAGACTATCACCCTCGAGGTCGAATCGAGTGACACGATTGATAATGTCAAATCC 25437
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| || || ||||| || || || || || |||||||| || |||| | ||||||||||
Sbjct 25438 AAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAA 25497
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
||| | |||||| | ||| | || || |||||||| || |||||||| ||| | |||
Sbjct 25498 CAACTCGAAGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCAACCCTTCAT 25557
Query 27192 TTGGTTTTGCGTTTGCGGGGTGG 27214
| || || ||| | || || ||
Sbjct 25558 CTCGTCTTACGTCTACGTGGAGG 25580
>seq1483
Length=199378
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056
|| || || || || || || ||| | ||||| | ||||| || | || ||| | |||
Sbjct 28814 TTCGTCAAGACCCTTACGGGTAAGACCATTACATTGGAAGTTGAGTCTTCGGACACAATT 28755
Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116
|| | ||||| || || || ||||| || ||||| ||||| || ||||| |||||
Sbjct 28754 GATAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAACAACGTTTG 28695
Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176
|| | ||| || || ||| | || || | || |||| ||||||||||| ||||||
Sbjct 28694 ATCTTCGCTGGAAAGCAACTCGAGGATGGACGCACTCTTTCAGATTACAACATCCAAAAG 28635
Query 27177 G 27177
|
Sbjct 28634 G 28634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434909081873280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |