Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq25 93.3 4e-14
>seq25
Length=178929
Score = 93.3 bits (102), Expect = 4e-14
Identities = 169/243 (70%), Gaps = 6/243 (2%)
Strand=Plus/Plus
Query 6778 ATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGT 6837
|||| |||| |||||||| | || | ||||| ||| |||| || || | |||| |
Sbjct 140815 ATCCCTCGGATTCCACGCACTCAAAATGATCCGTCTATCATACGGATTATTCCTCAACTT 140874
Query 6838 GTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCG 6897
||| || || | || | ||| || |||||| || | ||| |||| |||| |
Sbjct 140875 GTCAATAACCTCTTGTAACTGATCGACTCCCTTGCCTGTATAATCCGTTTCGGCATCTAC 140934
Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957
||| || |||||||| |||| ||| ||||| || ||||| || || | ||| |||| | |
Sbjct 140935 ATATTCAGCCCCAAAATGTCGCCATTGGAAGCCATAGACTGGTCCTAGGTC-CCCTAC-C 140992
Query 6958 CCGAGATGGGAACCCCC---GCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGAT 7014
|| |||| ||| ||| ||| || || | ||||| || |||| ||||||||||
Sbjct 140993 GCGCGATGCGAAAGCCCTACGCTA-TCGAGGTATTCTCGCGATCCGTTTCCGTCCCAGAT 141051
Query 7015 CTT 7017
|||
Sbjct 141052 CTT 141054
Score = 93.3 bits (102), Expect = 4e-14
Identities = 169/243 (70%), Gaps = 6/243 (2%)
Strand=Plus/Minus
Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGC---GGGGGTTCCCATCT 34384
||||||||||||| |||| || ||||| | || || ||| ||| ||| ||||
Sbjct 141054 AAGATCTGGGACGGAAACGGATCGCGAGAATACCTCGA-TAGCGTAGGGCTTTCGCATCG 140996
Query 34385 CGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAG 34444
|| | | |||| ||| | || || ||||| || ||||| ||| |||| |||||||| ||
Sbjct 140995 CGCG-GTAGGG-GACCTAGGACCAGTCTATGGCTTCCAATGGCGACATTTTGGGGCTGAA 140938
Query 34445 TATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATC 34504
||| | |||| |||| ||| | || |||||| || ||| | || | || ||
Sbjct 140937 TATGTAGATGCCGAAACGGATTATACAGGCAAGGGAGTCGATCAGTTACAAGAGGTTATT 140878
Query 34505 GACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAG 34564
|||| |||| | || || |||| ||| ||||| | || | |||||||| |||| |
Sbjct 140877 GACAAGTTGAGGAATAATCCGTATGATAGACGGATCATTTTGAGTGCGTGGAATCCGAGG 140818
Query 34565 GAT 34567
|||
Sbjct 140817 GAT 140815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448252795978080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |