Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq25 93.3 4e-14 >seq25 Length=178929 Score = 93.3 bits (102), Expect = 4e-14 Identities = 169/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 6778 ATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGT 6837 |||| |||| |||||||| | || | ||||| ||| |||| || || | |||| | Sbjct 140815 ATCCCTCGGATTCCACGCACTCAAAATGATCCGTCTATCATACGGATTATTCCTCAACTT 140874 Query 6838 GTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCG 6897 ||| || || | || | ||| || |||||| || | ||| |||| |||| | Sbjct 140875 GTCAATAACCTCTTGTAACTGATCGACTCCCTTGCCTGTATAATCCGTTTCGGCATCTAC 140934 Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 ||| || |||||||| |||| ||| ||||| || ||||| || || | ||| |||| | | Sbjct 140935 ATATTCAGCCCCAAAATGTCGCCATTGGAAGCCATAGACTGGTCCTAGGTC-CCCTAC-C 140992 Query 6958 CCGAGATGGGAACCCCC---GCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGAT 7014 || |||| ||| ||| ||| || || | ||||| || |||| |||||||||| Sbjct 140993 GCGCGATGCGAAAGCCCTACGCTA-TCGAGGTATTCTCGCGATCCGTTTCCGTCCCAGAT 141051 Query 7015 CTT 7017 ||| Sbjct 141052 CTT 141054 Score = 93.3 bits (102), Expect = 4e-14 Identities = 169/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGC---GGGGGTTCCCATCT 34384 ||||||||||||| |||| || ||||| | || || ||| ||| ||| |||| Sbjct 141054 AAGATCTGGGACGGAAACGGATCGCGAGAATACCTCGA-TAGCGTAGGGCTTTCGCATCG 140996 Query 34385 CGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAG 34444 || | | |||| ||| | || || ||||| || ||||| ||| |||| |||||||| || Sbjct 140995 CGCG-GTAGGG-GACCTAGGACCAGTCTATGGCTTCCAATGGCGACATTTTGGGGCTGAA 140938 Query 34445 TATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATC 34504 ||| | |||| |||| ||| | || |||||| || ||| | || | || || Sbjct 140937 TATGTAGATGCCGAAACGGATTATACAGGCAAGGGAGTCGATCAGTTACAAGAGGTTATT 140878 Query 34505 GACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAG 34564 |||| |||| | || || |||| ||| ||||| | || | |||||||| |||| | Sbjct 140877 GACAAGTTGAGGAATAATCCGTATGATAGACGGATCATTTTGAGTGCGTGGAATCCGAGG 140818 Query 34565 GAT 34567 ||| Sbjct 140817 GAT 140815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448252795978080