Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 170 4e-37
seq861 163 7e-35
seq1483 120 7e-22
>seq1406
Length=252419
Score = 170 bits (188), Expect = 4e-37
Identities = 171/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| | ||||| |||||||| ||||||||||| || || | | |||
Sbjct 215327 ACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGT 215268
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| |||| |||||||||||||| || || || ||||||||||| || | ||
Sbjct 215267 TCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACC 215208
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| ||||| ||||| ||||| || ||||| || || || |||||||||||
Sbjct 215207 CTCCTTATCCTGAATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAACCTCGAG 215148
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||||||||||||| ||||| ||||| || || | |||||
Sbjct 215147 AGTGATCGTCTTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106
Score = 149 bits (164), Expect = 1e-30
Identities = 153/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| ||||| || |||||||| || |||||||| ||||| | || ||
Sbjct 214816 ACGAAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGT 214757
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||| || || |||||||| || || ||||| | ||||| || || || |||| |||
Sbjct 214756 ACGTCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATTCC 214697
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || ||||| ||||||||||| || || ||||| ||
Sbjct 214696 CTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCGGACGACTCCACCTCAAG 214637
Query 211073 AGTGATCGTCTTTCCCGTGA 211092
||||| ||||| || ||||
Sbjct 214636 GGTGATAGTCTTACCGGTGA 214617
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| |||| || || | ||| ||||| || || |||||||| || || |||| ||||||
Sbjct 215099 ACGGAGTCGGAGAACCAAGTGTAGAGTAGATTCCTTTTGGATATTGTAGTCCGAAAGGGT 215040
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || || ||||| || || |||||||| | ||||||||||| || | ||
Sbjct 215039 GCGGCCGTCCTCAAGTTGCTTCCCAGCAAAGATAAGTCTCTGTTGGTCAGGTGGGATGCC 214980
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||| || ||||| || ||||| ||||| || || ||| |||||||||||
Sbjct 214979 CTCCTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGTATCCGAGGACTCAACCTCGAG 214920
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104
||||| ||||| || || | ||||| ||||
Sbjct 214919 GGTGATGGTCTTGCCGGTCAAGGTCTTGACAA 214888
Score = 122 bits (134), Expect = 2e-22
Identities = 162/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || || | ||| | |||| ||| ||||||||||||||||| ||
Sbjct 215558 TCCACGCAGGCGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCTGAG 215499
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| | ||||| |||| |||||||| ||||| || | || ||||| || || || |
Sbjct 215498 TGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGGAT 215439
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||| |||||||||||| || || || || |||||||| || ||||| ||
Sbjct 215438 ACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAACTTC 215379
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| || || ||||| ||||| | |||||| || || | ||||||
Sbjct 215378 TAATGTAATAGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334
>seq861
Length=344942
Score = 163 bits (180), Expect = 7e-35
Identities = 158/203 (78%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || ||| || ||||| || ||||| || |||||||| || |||| ||
Sbjct 25578 TCCACGTAGACGTAAGACGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGAGAG 25519
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | || ||||| || || ||||| |||||||| ||||||||||| ||||| ||||
Sbjct 25518 GGTGCGGCCGTCTTCGAGTTGTTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGAAT 25459
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||| ||||||||||||||||| ||| || || || || |||||| ||| |||||
Sbjct 25458 TCCCTCCTTGTCCTGGATCTTGGATTTGACATTATCAATCGTGTCACTCGATTCGACCTC 25399
Query 211070 GAGAGTGATCGTCTTTCCCGTGA 211092
||| ||||| ||||| |||||||
Sbjct 25398 GAGGGTGATAGTCTTGCCCGTGA 25376
>seq1483
Length=199378
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||| ||||| | ||| || | |||||| || || ||||| || ||||||||
Sbjct 28636 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 28695
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||||||||||| || || | || ||||||||||||||||| || || || ||
Sbjct 28696 AAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTATCA 28755
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| || ||||| || | || || ||||| ||||| || ||||| || ||
Sbjct 28756 ATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGAA 28814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159126544297610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |