Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 120 2e-22
seq861 96.9 2e-15
seq1483 84.2 1e-11
>seq1406
Length=252419
Score = 120 bits (132), Expect = 2e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || |||||||| ||||| |||||||||||||| ||||| || |
Sbjct 215106 ATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGTCTTCA 215165
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| ||| | || ||| | || | || ||| || || || ||| | || || || ||
Sbjct 215166 GATACTATCGACAATGTGAAGTC-GAAGATTCAGGATAAGGAGGGTATCCCACCTGACCA 215224
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || || ||||| ||| |||| || | || || || ||| |||||
Sbjct 215225 ACAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAA 215284
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| ||||| ||||||||| | ||||| ||
Sbjct 215285 CATCCAAAAGGAGTCCACACTTCATTTGGT 215314
Score = 113 bits (124), Expect = 3e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||| || | ||||| || || || || | |||||||| || ||
Sbjct 215334 ATGCAGATCTTCGTTAAGACTTTGACGGGCAAGACTATTACATTAGAAGTTGAGTCTTCG 215393
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || |||| | | || || || ||| | || ||||||||
Sbjct 215394 GACACCATTGATAATGTCAAGTCAAAGA-TCCAGGATAAGGAGGGTATCCCACCAGATCA 215452
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| || || || |||||||| ||| |||| || | || || | ||||||| ||
Sbjct 215453 ACAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTATAA 215512
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||| ||||| ||| ||| || || || || | | |||| ||||||
Sbjct 215513 CATCCAAAAGGAGAGCACTTTGCACTTGGTGCTTCGCCTGCGTGGAGGA 215561
>seq861
Length=344942
Score = 96.9 bits (106), Expect = 2e-15
Identities = 147/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 23633 TCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAA 23691
||||||| || || ||||| ||||| || || || | ||||| |||| ||| | |||
Sbjct 25376 TCACGGGCAAGACTATCACCCTCGAGGTCGAATCGAGTGACACGATTGATAATGTCAAAT 25435
Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751
| || | | ||||| || || | || || |||||||| || |||| || ||||||
Sbjct 25436 CCAAGA-TCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGC 25494
Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTA 23811
|||||||| ||||||| ||||| | || |||||||| || || ||||| || |
Sbjct 25495 AAACAACTCGAAGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCAACCCTT 25554
Query 23812 CATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||| | || ||| | | || ||||||
Sbjct 25555 CATCTCGTCTTACGTCTACGTGGAGGA 25581
>seq1483
Length=199378
Score = 84.2 bits (92), Expect = 1e-11
Identities = 128/180 (71%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679
||||| || ||||| ||||| || || || || | |||||||| || ||||||| ||
Sbjct 28814 TTCGTCAAGACCCTTACGGGTAAGACCATTACATTGGAAGTTGAGTCTTCGGACACAATT 28755
Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738
|| ||| | || | || | | ||||| || || | || || || ||||| |||||
Sbjct 28754 GATAATGTCAAGTCCAAGA-TCCAGGACAAGGAGGGCATCCCACCGGACCAACAACGTTT 28696
Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798
|| || || || || ||||| || || | ||||||| | ||||||||||| |||||
Sbjct 28695 GATCTTCGCTGGAAAGCAACTCGAGGATGGACGCACTCTTTCAGATTACAACATCCAAAA 28636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338002539190712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |