Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1406 134 3e-26 seq1054 134 3e-26 seq1483 107 5e-18 seq861 93.3 1e-13 >seq1406 Length=252419 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | || || ||||| || ||||||| ||||| |||| ||| || Sbjct 215327 ACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGT 215268 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || | ||||| || ||||| || ||||| |||||||| || || ||||| Sbjct 215267 TCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACC 215208 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || || ||||| ||||||| ||||| || ||||| | || || || | Sbjct 215207 CTCCTTATCCTGAATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAACCTCGAG 215148 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | || || | ||| | |||||| Sbjct 215147 AGTGATCGTCTTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || | ||| ||||| ||||| ||||||| |||||| || | | || Sbjct 215099 ACGGAGTCGGAGAACCAAGTGTAGAGTAGATTCCTTTTGGATATTGTAGTCCGAAAGGGT 215040 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || ||||||||||| |||||||||| |||||||| || || || || Sbjct 215039 GCGGCCGTCCTCAAGTTGCTTCCCAGCAAAGATAAGTCTCTGTTGGTCAGGTGGGATGCC 214980 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| ||||| ||| || ||||| || || |||| || || || | Sbjct 214979 CTCCTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGTATCCGAGGACTCAACCTCGAG 214920 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| ||||| || || Sbjct 214919 GGTGATGGTCTTGCCGGTCAAGGTCTT 214893 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| |||||||| ||||| || || |||| |||||||| | | ||| Sbjct 214816 ACGAAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGT 214757 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || || ||||| | ||||| || || || ||||| || Sbjct 214756 ACGTCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATTCC 214697 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||||||||| || | ||||| || | Sbjct 214696 CTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCGGACGACTCCACCTCAAG 214637 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 214636 GGTGATAGTCTTACCGGT 214619 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| | |||| || ||||||| || |||||| | || | ||||| Sbjct 215545 AGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCTGAGTGTACGGCCATCC 215486 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || ||||| || | ||| ||||| || || || ||||| ||||| || Sbjct 215485 TCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGGATACCCTCCTTATCC 215426 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| || |||||||| || | || || ||||| || || ||| Sbjct 215425 TGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAACTTCTAATGTAATAGTC 215366 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| || | ||| | ||||| Sbjct 215365 TTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334 >seq1054 Length=43506 Score = 134 bits (148), Expect = 3e-26 Identities = 214/301 (71%), Gaps = 7/301 (2%) Strand=Plus/Minus Query 7429 AAGGAACTGGAAACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGG-TACTAT 7487 ||||| | | ||| |||||||||||||||| | ||||| || ||||| || ||| Sbjct 13330 AAGGATATAGGAACATTATATTTAATATTTGCTTTATTTTCAGG-ATTATTGGGTACAGC 13272 Query 7488 ATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTA 7546 |||||| | ||||||| |||||||| | || ||| |||| |||||| | || Sbjct 13271 TTTTTCTGTTCTTATAAGACTAGAATTAAGCGGACCTGGTGTTCAATATATTGCA-GATA 13213 Query 7547 ATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTG 7606 || ||| | ||||| | || || || || || || | | ||||| |||||| | | Sbjct 13212 AT---CAATTATACAATGCGATCATAACTGCCCACGCAATATTAATGATATTCTTTATGG 13156 Query 7607 TTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTC 7666 ||||||| | | | ||||| || |||||||| | || | || ||| | | || | || Sbjct 13155 TTATGCCAGCTTTAATAGGTGGATTCGGAAACTTTTTATTACCATTACTAGTAGGGGGTC 13096 Query 7667 CTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTAT 7726 | |||||||| || || || | ||||||||||||||||||||| |||| ||| |||| Sbjct 13095 CAGATATGGCATTCCCTAGATTAAACAATATAAGTTTTTGATTATTACCACCTAGTTTAT 13036 Query 7727 T 7727 | Sbjct 13035 T 13035 >seq1483 Length=199378 Score = 107 bits (118), Expect = 5e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| |||||||| | | ||| | ||||| || || ||||| ||||||||||| Sbjct 28636 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 28695 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||||||||||| || || || || |||||||| |||||||| ||| ||| || Sbjct 28696 AAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTATCA 28755 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||| || | || || || || || || ||||| ||||| Sbjct 28756 ATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGT 28799 >seq861 Length=344942 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 ||| || || || || || || || |||| ||||| || | | || | || ||||| Sbjct 25563 GACGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTC 25504 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 || || || || |||||||| || |||||||| || || ||||| || |||||||| || Sbjct 25503 GAGTTGTTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGAATTCCCTCCTTGTCCTG 25444 Query 225624 GATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 |||||| || ||| || || ||||| | ||| || || | ||||| ||||| Sbjct 25443 GATCTTGGATTTGACATTATCAATCGTGTCACTCGATTCGACCTCGAGGGTGATAGTCTT 25384 Query 225684 GCCCGT 225689 |||||| Sbjct 25383 GCCCGT 25378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192505011269516