Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 134 3e-26
seq1054 134 3e-26
seq1483 107 5e-18
seq861 93.3 1e-13
>seq1406
Length=252419
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| | || || ||||| || ||||||| ||||| |||| ||| ||
Sbjct 215327 ACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGT 215268
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| ||||| || | ||||| || ||||| || ||||| |||||||| || || |||||
Sbjct 215267 TCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACC 215208
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| || || ||||| ||||||| ||||| || ||||| | || || || |
Sbjct 215207 CTCCTTATCCTGAATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAACCTCGAG 215148
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||||||||| || || | || || | ||| | ||||||
Sbjct 215147 AGTGATCGTCTTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106
Score = 131 bits (144), Expect = 4e-25
Identities = 153/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| |||| || || | ||| ||||| ||||| ||||||| |||||| || | | ||
Sbjct 215099 ACGGAGTCGGAGAACCAAGTGTAGAGTAGATTCCTTTTGGATATTGTAGTCCGAAAGGGT 215040
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || || ||||||||||| |||||||||| |||||||| || || || ||
Sbjct 215039 GCGGCCGTCCTCAAGTTGCTTCCCAGCAAAGATAAGTCTCTGTTGGTCAGGTGGGATGCC 214980
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||| ||||| ||| || ||||| || || |||| || || || |
Sbjct 214979 CTCCTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGTATCCGAGGACTCAACCTCGAG 214920
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||| ||||| || ||
Sbjct 214919 GGTGATGGTCTTGCCGGTCAAGGTCTT 214893
Score = 123 bits (136), Expect = 6e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| |||||||| ||||| || || |||| |||||||| | | |||
Sbjct 214816 ACGAAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGT 214757
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || || ||||| | ||||| || || || ||||| ||
Sbjct 214756 ACGTCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATTCC 214697
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| || ||||||||||| || | ||||| || |
Sbjct 214696 CTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCGGACGACTCCACCTCAAG 214637
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| ||||| || ||
Sbjct 214636 GGTGATAGTCTTACCGGT 214619
Score = 116 bits (128), Expect = 9e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| | |||| || ||||||| || |||||| | || | |||||
Sbjct 215545 AGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCTGAGTGTACGGCCATCC 215486
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | ||||| || ||||| || | ||| ||||| || || || ||||| ||||| ||
Sbjct 215485 TCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGGATACCCTCCTTATCC 215426
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
||||||||| ||| ||| || |||||||| || | || || ||||| || || |||
Sbjct 215425 TGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAACTTCTAATGTAATAGTC 215366
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||||||||| || | ||| | |||||
Sbjct 215365 TTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334
>seq1054
Length=43506
Score = 134 bits (148), Expect = 3e-26
Identities = 214/301 (71%), Gaps = 7/301 (2%)
Strand=Plus/Minus
Query 7429 AAGGAACTGGAAACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGG-TACTAT 7487
||||| | | ||| |||||||||||||||| | ||||| || ||||| || |||
Sbjct 13330 AAGGATATAGGAACATTATATTTAATATTTGCTTTATTTTCAGG-ATTATTGGGTACAGC 13272
Query 7488 ATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTA 7546
|||||| | ||||||| |||||||| | || ||| |||| |||||| | ||
Sbjct 13271 TTTTTCTGTTCTTATAAGACTAGAATTAAGCGGACCTGGTGTTCAATATATTGCA-GATA 13213
Query 7547 ATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTG 7606
|| ||| | ||||| | || || || || || || | | ||||| |||||| | |
Sbjct 13212 AT---CAATTATACAATGCGATCATAACTGCCCACGCAATATTAATGATATTCTTTATGG 13156
Query 7607 TTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTC 7666
||||||| | | | ||||| || |||||||| | || | || ||| | | || | ||
Sbjct 13155 TTATGCCAGCTTTAATAGGTGGATTCGGAAACTTTTTATTACCATTACTAGTAGGGGGTC 13096
Query 7667 CTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTAT 7726
| |||||||| || || || | ||||||||||||||||||||| |||| ||| ||||
Sbjct 13095 CAGATATGGCATTCCCTAGATTAAACAATATAAGTTTTTGATTATTACCACCTAGTTTAT 13036
Query 7727 T 7727
|
Sbjct 13035 T 13035
>seq1483
Length=199378
Score = 107 bits (118), Expect = 5e-18
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
||||||| |||||||| | | ||| | ||||| || || ||||| |||||||||||
Sbjct 28636 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 28695
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| ||||||||||| || || || || |||||||| |||||||| ||| ||| ||
Sbjct 28696 AAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTATCA 28755
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| ||||| || | || || || || || || ||||| |||||
Sbjct 28756 ATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGT 28799
>seq861
Length=344942
Score = 93.3 bits (102), Expect = 1e-13
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563
||| || || || || || || || |||| ||||| || | | || | || |||||
Sbjct 25563 GACGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTC 25504
Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623
|| || || || |||||||| || |||||||| || || ||||| || |||||||| ||
Sbjct 25503 GAGTTGTTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGAATTCCCTCCTTGTCCTG 25444
Query 225624 GATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683
|||||| || ||| || || ||||| | ||| || || | ||||| |||||
Sbjct 25443 GATCTTGGATTTGACATTATCAATCGTGTCACTCGATTCGACCTCGAGGGTGATAGTCTT 25384
Query 225684 GCCCGT 225689
||||||
Sbjct 25383 GCCCGT 25378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192505011269516
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |