Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq843 269 4e-67 >seq843 Length=104768 Score = 269 bits (298), Expect = 4e-67 Identities = 1116/1745 (64%), Gaps = 33/1745 (2%) Strand=Plus/Minus Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871 ||||| ||||||||||| ||||| || |||||||| |||| || ||||||||| || Sbjct 64904 GTACGGAGATAGTACATTCCAGTCTTGAGACCCAGCTTCCAGCCTGCGAAATGCATACTG 64845 Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931 || | || | || || || || || ||||| || ||| |||||| ||| Sbjct 64844 GTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATG 64785 Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 76991 || || || | || || ||||| | | ||||| ||| | || ||||||| || Sbjct 64784 AATGCACCACGGTCGGCAGCCATCTGGACGATGGTACGTTGCGAGATCTCCCAAACGGTC 64725 Query 76992 TTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCT 77048 ||| ||| ||||||||| | || | ||||| | ||||| || || |||||||| Sbjct 64724 TTGTAAAGAGCCTTGATATCAGCCGGGATGTTTGGAACATTTTGGATTGATCCACCATCA 64665 Query 77049 GATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGG 77108 | || || ||||| || | || ||| | | | | || | | | | || Sbjct 64664 GCAATGATACGGTTCTTCATGTTGTCGGACCAAAGTCCCATATCGACGAGATCCTTGAGA 64605 Query 77109 AGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 77168 || || || || | ||| |||||||||| | || | |||| ||| || || | Sbjct 64604 AGCCATGGGTTGACAACTTGGAATTCTCCAGCAAGGACACGTCGAGAGTAGATGTTGGAG 64545 Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228 |||||||| || | | || || ||| | ||||||| ||| || ||||||||| Sbjct 64544 GTATATGGCTCGAAGCACTCGTTAAATCCAAGAATTTGACTGGTACTGGCTGTTGGCATA 64485 Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTAT-CTTTTAGATATTT 77287 || || || | ||||| || | || ||| ||| ||| | | ||| || || Sbjct 64484 GGAGCGACGAGCAAACTGTTACGGATACCGTGTTGAGAGATCTGTTGCTTCAAGCTAGC- 64426 Query 77288 CCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACT 77347 ||||||||||||||| | |||| ||| |||| | || ||||| || || ||| Sbjct 64425 CCAATCCCAAAGATCGGTAGGTGTGACACCCCACATGTCATATTGGAGCTCGCCCTTAGA 64366 Query 77348 AGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGC 77407 ||| || || | ||| || ||||| || || | | | || | || || Sbjct 64365 GGCAGGCGAGCCTTGATAAGTCTCATATGGACCATGAATCTTTGCCAACTCCATGGAAGC 64306 Query 77408 TTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAA 77466 ||| || ||| ||||| || |||||||| | | ||||| | |||| || | Sbjct 64305 AGTCAAAGCAGCGTGGTAAATGGTCTCGAAAATTTGGATGTTGAGGTGCTTGGCCTCCGG 64246 Query 77467 TACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATAC 77526 | || || ||| | | | | | |||||||| || | || ||||| || | | Sbjct 64245 GGAT-TCGAAAGGAAGACGAAGAGCCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAG 64187 Query 77527 CAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGT 77586 |||||||||| || | |||| || | || || |||| || || || || | | Sbjct 64186 CAATAGGTCTGTGACGGAAATTGCTCTTTCTTGCCTCAGGAACCGGGTAGTAGTTGACAT 64127 Query 77587 CTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAAT 77646 | ||||| ||||| | || | || || |||| || || | || || | || | Sbjct 64126 CGATAATCTTATTCAAGTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTTTGGAAGT 64067 Query 77647 CAAA--------TCTTC-CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697 || | ||||| |||| |||| | | | ||| | ||||| | ||| | Sbjct 64066 CATAAGTGGCGGTCTTCTCATC---AACATAGGTTGGGAGAGCAAGCGATGCCAAATTGC 64010 Query 77698 AAACTGCTACCTCATTAGCGTTGGCA-TATTGTATTATCTCGGTACATAGATTACTACAT 77756 |||| || ||||||| | || || || | | || || || || | || | | Sbjct 64009 AAACAGCGACCTCATCTG-GTGCACAGTACTCGACGATTTCAGTGCACAAGTTGGAGCTT 63951 Query 77757 TTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATA 77816 ||| || || ||||| | ||||||||||||| ||||| | ||||| ||||| || Sbjct 63950 CGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATG 63891 Query 77817 AACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTT 77876 || || | ||||| ||| | || | || | ||||| | ||| | | ||||| Sbjct 63890 AAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTG 63831 Query 77877 ATCATAGATTTGTATCGCCT---CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCA 77933 || | ||| | | | ||| || |||| ||| | | ||| || || Sbjct 63830 ATGCTC---TTGCGACCCTTGCCCTCAGACTCGTATTTCTCATACAACGCTTCGAACTCG 63774 Query 77934 TCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCA 77993 || || | ||||| |||| ||||| || || || ||||||||||||| |||||| | Sbjct 63773 TCACCGTAGACATCGGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGA 63714 Query 77994 TCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 78053 | | | ||| || ||||| |||||||| || ||||| ||||| || ||||| ||| Sbjct 63713 TTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGG 63654 Query 78054 GTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAA 78113 | | | || || ||||| |||||| || ||||| ||||| | || ||| | Sbjct 63653 GCACGAACCTCCTCCTTTCCATGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCG 63594 Query 78114 TGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATA 78173 |||||||| || || || || || | | | ||||| || || ||||| || ||||| | | Sbjct 63593 TGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACA 63534 Query 78174 TATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTT 78233 |||||||||||||| || ||||||| | ||| |||| || ||||| || |||| || Sbjct 63533 TATCTGGCGGTGTTGTTGAAAACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTA 63474 Query 78234 GTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA--ATGGATATCCCTATTCCTC 78291 || || | |||||| || | || || || | | || || | || || || | Sbjct 63473 GTACCGGCGATATAAGCGCCGGTCGCACGGATTCTGTGAACATTGAGA--CCGATACCAC 63416 Query 78292 CTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGT 78351 | || |||| || || | |||||| || || || ||||| ||||| || || |||| Sbjct 63415 CAGCATTCTTTGAAATCATGGCGCAAATCTTTAACGTGTCGTAAATACCATCAATGCTGT 63356 Query 78352 CATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAA 78411 | ||| |||||| | ||| || ||| || | ||| || || || || | Sbjct 63355 CCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGCCTGTGGTGTGCCAGCTGCGA 63296 Query 78412 ATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAG 78471 | | || || || || || || || |||| || | | ||||| || || || | Sbjct 63295 AGAGGGTTGGGGAGGCGTGGGTGAAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGG 63236 Query 78472 CTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGT 78530 | | || || ||| || | |||||||| ||||| |||||||| | ||||||||| || Sbjct 63235 CAGCCTCGATATCCTCACCG-TGAATTCCGACCGCAACACGCATAATCATATGCTGTGGA 63177 Query 78531 CTTTC 78535 | ||| Sbjct 63176 CGTTC 63172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694653916720960