Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq843 275 9e-69 >seq843 Length=104768 Score = 275 bits (304), Expect = 9e-69 Identities = 1144/1785 (64%), Gaps = 30/1785 (2%) Strand=Plus/Minus Query 75366 TCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATA 75424 |||| ||| | |||||| |||||||| | || || | | ||||| ||||||||||| Sbjct 64946 TCTTGATCAACCGTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATT 64887 Query 75425 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTC 75484 ||||| || |||||||| |||| || ||||||||| || || | || | Sbjct 64886 CCAGTCTTGAGACCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTT 64827 Query 75485 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 75544 || || || || || ||||| || ||| |||||| ||||| || || | || || Sbjct 64826 GGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCA 64767 Query 75545 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 75604 ||||| | | ||||| ||| | || ||||||| || ||| ||| |||||| Sbjct 64766 GCCATCTGGACGATGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATA 64707 Query 75605 TCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTG 75661 ||| | || | |||| | ||||| || ||||| ||||||| || || ||||| Sbjct 64706 TCAGCCGGGATGTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTC 64647 Query 75662 ATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATT 75721 || | || ||| | | | ||| | | | | || || || || |||| | Sbjct 64646 ATGTTGTCGGACCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACT 64587 Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||||| | || | ||||| ||| || || ||||||||| || | | Sbjct 64586 TGGAATTCTCCAGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCAC 64527 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || ||| | ||||||| || || || |||||||| || || | ||||| Sbjct 64526 TCGTTAAATCCAAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTG 64467 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCTGA 75900 || | || ||| ||| ||| | | ||| || || ||||||||||||||| | Sbjct 64466 TTACGGATACCGTGTTGAGAGATCTGTTGCTTCAAGCTAGC-CCAATCCCAAAGATCGGT 64408 Query 75901 TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATA 75960 ||| ||| |||| | || ||||| || || || ||| || || | ||| Sbjct 64407 AGGTGTGACACCCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATA 64348 Query 75961 TGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC---GCAACTCGCCTCTAACGCACCGTA 76017 || || || | || | | | || | || | || | | || ||| ||| Sbjct 64347 AGTCTCATATGGACCATGAATCTTTGCCAACTCCATGGAAGCAGTC---AAAGCAGCGTG 64291 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGAT 76076 ||||| || |||||||| | | || || | |||| || | | | || |||||| Sbjct 64290 GTAAATGGTCTCGAAAATTTGGATGTTGAGGTGCTTGGCCTCCGGGGAT-TCGAAAGGAA 64232 Query 76077 AATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTC 76136 | | | | | || ||||| || || || ||||| || | | |||||||||| || | Sbjct 64231 GACGAAGAGCCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGAC 64172 Query 76137 TCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGA 76196 |||| || || || |||| ||||| || || | ||| ||||| ||||| | Sbjct 64171 GGAAATTGCTCTTTCTTGCCTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCA 64112 Query 76197 GATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA-AATTTTCCATCT 76255 || |||| || |||| || || | || || | || ||| || | | ||| Sbjct 64111 AGTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCT 64052 Query 76256 A-TCACAAACATA--TTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAG 76310 ||| |||||| || ||||| | ||||| | ||| ||||| || ||||||| | Sbjct 64051 TCTCATCAACATAGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTG 63992 Query 76311 CATTGGCA-TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 | || || | | || || ||||| | || | ||| || || ||||| Sbjct 63991 G-TGCACAGTACTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTC 63933 Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCA 76429 | ||||||||||||| ||| || | ||||| ||||| | || || |||| || ||| Sbjct 63932 TTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCA 63873 Query 76430 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGC 76489 | || | || | ||||| | ||| | | ||||| || | ||| | | Sbjct 63872 GTTTGAGCCTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGACCC 63816 Query 76490 TT---CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCC 76546 || ||| || |||| ||| ||| ||| || || || || | ||||| || Sbjct 63815 TTGCCCTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCC 63756 Query 76547 AAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTC 76606 ||||||||||| || || || |||||||||| ||| || || | | ||| || ||| Sbjct 63755 AAACCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGATTCTTTTCAACACGCTTC 63696 Query 76607 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTT 76666 || |||||||| || ||||| ||||| || ||||| |||| | | || || ||| Sbjct 63695 ATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTT 63636 Query 76667 CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 76726 || |||||| || || |||||||| | || ||| | |||||||| || || || Sbjct 63635 CCATGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAG 63576 Query 76727 ATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTA 76786 || || | | |||| || || || ||||| || ||||| | ||||||||| ||||| || Sbjct 63575 ATGGCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTG 63516 Query 76787 TAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTT 76846 ||||||| | ||| |||| || ||||| || | || || || || | |||||| Sbjct 63515 AAAACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCG 63456 Query 76847 CCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGA 76906 || ||||| || | || | || || || || || || | || || || | Sbjct 63455 CCGGTCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCATTCTTTGAAATCATG 63396 Query 76907 GCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGA 76966 || || || || ||||| || || || || || || || ||| |||||| | ||| Sbjct 63395 GCGCAAATCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGG 63336 Query 76967 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGA 77026 || ||| || | ||| || || || || || | || || || || || Sbjct 63335 AAGCAGGATGAAAGTTGTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGG 63276 Query 77027 GTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCC-CATTG 77085 ||||| |||| || | | ||||| || || || | || || |||||| || | Sbjct 63275 GTGAAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG 63216 Query 77086 ATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130 |||||||| || || |||||||| | ||||||||| || ||||| Sbjct 63215 -TGAATTCCGACCGCAACACGCATAATCATATGCTGTGGACGTTC 63172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712919125380480