Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1406 107 4e-18 seq1483 89.7 1e-12 seq861 84.2 5e-11 >seq1406 Length=252419 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||| || ||||| |||||||||||||| |||| || |||| ||||| Sbjct 215317 AGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCC 215258 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || ||||| || || | ||| ||||| | | ||| || ||||| || Sbjct 215257 TCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCC 215198 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | |||||| ||| || || ||||| || || Sbjct 215197 TGAATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAACCTCGAGAGTGATCGTC 215138 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||| | ||||| Sbjct 215137 TTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| ||||||||||| |||||| | || | ||||| || | || |||||||| Sbjct 215525 CTCCTTTTGGATGTTATAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAA 215466 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 || | | ||| || || | | ||| || ||||| || || || ||| |||||| | Sbjct 215465 AATCAATCGCTGTTGATCTGGTGGGATACCCTCCTTATCCTGGATCTTTGACTTGACATT 215406 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | | |||| ||| ||| ||||| | |||||||| |||||||| | |||||| || Sbjct 215405 ATCAATGGTGTCCGAAGACTCAACTTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAAC 215346 Query 152093 GAAGACCTGCAT 152104 ||||| |||||| Sbjct 215345 GAAGATCTGCAT 215334 >seq1483 Length=199378 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974 ||||||||||||||||| | | ||| | ||||| || || ||||| || ||||||| Sbjct 28636 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTT--CCAGCGAAGA 28693 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | | || ||||||| | ||| || ||||| || || || || |||||| | | Sbjct 28694 TCAAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTAT 28753 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | |||| ||| ||| ||||| | ||||| || || ||||| || ||||| |||| Sbjct 28754 CAATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGA 28813 Query 152095 AG 152096 || Sbjct 28814 AG 28815 >seq861 Length=344942 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| |||||||| || ||||| || ||||||||||| || | | || | || ||||| Sbjct 25563 GACGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTC 25504 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| || | || || || | | ||||| ||||| || || Sbjct 25503 GAGTTGTTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGAATTCCCTCCTTGTCCTG 25444 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAGT 152071 || || ||||||| | || | |||| |||| || || || || || ||||| Sbjct 25443 GATCTTGGATTTGACATTATCAATCGTGTC---ACTCGATTCGACCTCGAGGGTGATAGT 25387 Query 152072 TTTGCCCGTGA 152082 |||||||||| Sbjct 25386 CTTGCCCGTGA 25376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153795461374094