Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 188 1e-42
seq1483 156 9e-33
seq861 141 2e-28
seq908 95.1 3e-14
>seq1406
Length=252419
Score = 188 bits (208), Expect = 1e-42
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| |||||||||||||| |||| || || ||||| || ||||||||||| || ||
Sbjct 215560 CCTCCACGCAGGCGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCTG 215501
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||||||||| | ||| || ||||| || ||||| || ||||| || ||
Sbjct 215500 AGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGG 215441
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||||||||| || |||||||||| || || |||| || |||||||||| || |||
Sbjct 215440 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAACT 215381
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | || || ||||| |||||||||||||||||||| ||||||||
Sbjct 215380 TCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334
Score = 168 bits (186), Expect = 1e-36
Identities = 167/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| |||| || ||| |||||||| |||||||| |
Sbjct 215105 ACCACCACGGAGTCGGAGAACCAAGTGTAGAGTAGATTCCTTTTGGATATTGTAGTCCGA 215046
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||| ||||| ||||| ||||| |||||||| | | ||||||||| ||
Sbjct 215045 AAGGGTGCGGCCGTCCTCAAGTTGCTTCCCAGCAAAGATAAGTCTCTGTTGGTCAGGTGG 214986
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| |||||||||||||| ||||| | || ||| | |||||||| ||||| | || ||
Sbjct 214985 GATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGTATCCGAGGACTCAAC 214926
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
||||| ||||| ||||| || ||||| ||||| ||
Sbjct 214925 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 214890
Score = 167 bits (184), Expect = 5e-36
Identities = 176/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
||||||||| || ||||| |||| ||| | ||| || ||||||||||||||||| |
Sbjct 215333 ACCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGA 215274
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| || ||||||||||| | ||| || || || || || | || ||||||||| |
Sbjct 215273 CAAG-GTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTG 215215
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
| ||||||||||| || || ||||| | || || | |||||||| || |||| || |
Sbjct 215214 GGATACCCTCCTTATCCTGAATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAA 215155
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| ||||||||||||||||| || || | ||||| |||||||| |||||
Sbjct 215154 CCTCGAGAGTGATCGTCTTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106
Score = 147 bits (162), Expect = 5e-30
Identities = 155/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || ||||| || | ||| || || ||||||||||| ||||
Sbjct 214822 ACCGCCACGAAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 214763
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || || ||||| || || || |||||||||||||||||||| || || ||
Sbjct 214762 TAGAGTACGTCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGGG 214703
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| ||||||| ||||| || | || ||
Sbjct 214702 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCGGACGACTCCAC 214643
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
|| || ||||| |||||||| ||
Sbjct 214642 CTCAAGGGTGATAGTCTTACCGGT 214619
>seq1483
Length=199378
Score = 156 bits (172), Expect = 9e-33
Identities = 142/179 (79%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|||||||||||||| || | ||| ||||| |||||||| ||||| || || || ||||||
Sbjct 28636 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 28695
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|||||||||||||| || || ||||||||||| |||||||| | || || ||||
Sbjct 28696 AAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTATCA 28755
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||||| || ||||| | || || ||||||||||| | ||||| |||||
Sbjct 28756 ATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGAA 28814
>seq861
Length=344942
Score = 141 bits (156), Expect = 2e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || || | || ||||| | || || || |||||||||||||| |
Sbjct 25580 CCTCCACGTAGACGTAAGACGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGAG 25521
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||| || || |||||||| ||||| ||||| | |||||||| ||| |||
Sbjct 25520 AGGGTGCGGCCGTCTTCGAGTTGTTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGA 25461
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| | ||| || |||| || ||||| | ||||||
Sbjct 25460 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTATCAATCGTGTCACTCGATTCGACC 25401
Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075
||||| ||||| ||||| |||||
Sbjct 25400 TCGAGGGTGATAGTCTTGCCCGT 25378
>seq908
Length=77775
Score = 95.1 bits (104), Expect = 3e-14
Identities = 169/247 (68%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 230164 TCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTC 230223
|| |||| || | |||| | ||| | |||||| | || ||| ||||||| |
Sbjct 45353 TCATCACCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCAC 45412
Query 230224 TTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTT 230283
|| |||||||||| || | || ||| |||||| || || ||||| ||||||||| |
Sbjct 45413 TTCTCGGCATGAACGCCAACCTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTCC 45472
Query 230284 TCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGC 230343
|| | | || || | ||||| || || || ||||| |||| |||||||||
Sbjct 45473 TCCTTTCCCTCGGCAATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTTATGGAGA 45532
Query 230344 TCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGC 230403
||| || || || || || ||||||||||| |||||||| ||||| |||| |
Sbjct 45533 ACATCTCCCTTGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTACCAAAAGG 45592
Query 230404 CCGGTGT 230410
|||| ||
Sbjct 45593 CCGGCGT 45599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046716212952956
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |