Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 127 1e-24
seq1483 95.1 9e-15
>seq1406
Length=252419
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169
||| || | ||| | | ||||| ||| | |||||||||||||||||||| ||||||
Sbjct 215561 TCCTCCACGCAGGCGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCT 215502
Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229
|||| || | || |||| ||||| ||||| || ||||| ||||| ||||||| ||
Sbjct 215501 GAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGG 215442
Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289
| ||| ||||| ||| ||||| ||| | | | |||||||| | || || ||
Sbjct 215441 GATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAAC 215382
Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| | ||||| ||||| ||||| | ||||| |||||||| |||||
Sbjct 215381 TTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334
Score = 122 bits (134), Expect = 6e-23
Identities = 139/187 (74%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || ||| |||||| |||||||||||||| | || || |||| ||
Sbjct 214803 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTACGTCCGTCCTCG 214744
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||||||||||||||| |||||||||| || | || ||||| |||
Sbjct 214743 AGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 214684
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | |||||||||| || |||||||| | || || |||||
Sbjct 214683 ATCTTGGACTTGACGTTATCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTA 214624
Query 44309 CCCGTGA 44315
|| ||||
Sbjct 214623 CCGGTGA 214617
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
|||| ||||| ||| |||||||||||||||||| |||| | || | || | || ||
Sbjct 215314 ACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGC-CATCCTC 215256
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| ||||| || || || || | ||||| || || | || | ||| ||||| |||
Sbjct 215255 CAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTG 215196
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||||| | | || || || | || || ||||| | || ||||||||
Sbjct 215195 AATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAACCTCGAGAGTGATCGTCTT 215136
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| ||||||||||| ||||| ||||||||
Sbjct 215135 TCCGGTGAGGGTCTTGACGAATATTTGCAT 215106
>seq1483
Length=199378
Score = 95.1 bits (104), Expect = 9e-15
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
||||||||||||||||||| | || ||| | || || || ||||| || || ||||
Sbjct 28634 CCTTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGA 28693
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267
||||||| || || || | || | || ||||| ||| ||||| ||| | |
Sbjct 28694 TCAAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTAT 28753
Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327
| || ||||| | || || || |||| ||||| ||||| ||||| |||||||| ||||
Sbjct 28754 CAATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGA 28813
Query 44328 AG 44329
||
Sbjct 28814 AG 28815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359982880025538
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |