Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1406 127 1e-24 seq1483 95.1 9e-15 >seq1406 Length=252419 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | | ||||| ||| | |||||||||||||||||||| |||||| Sbjct 215561 TCCTCCACGCAGGCGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCT 215502 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 |||| || | || |||| ||||| ||||| || ||||| ||||| ||||||| || Sbjct 215501 GAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGG 215442 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | ||| ||||| ||| ||||| ||| | | | |||||||| | || || || Sbjct 215441 GATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAAC 215382 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | ||||| ||||| ||||| | ||||| |||||||| ||||| Sbjct 215381 TTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334 Score = 122 bits (134), Expect = 6e-23 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| |||||||||||||| | || || |||| || Sbjct 214803 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTACGTCCGTCCTCG 214744 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||||||||| |||||||||| || | || ||||| ||| Sbjct 214743 AGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 214684 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || |||||||| | || || ||||| Sbjct 214683 ATCTTGGACTTGACGTTATCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTA 214624 Query 44309 CCCGTGA 44315 || |||| Sbjct 214623 CCGGTGA 214617 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||||| ||| |||||||||||||||||| |||| | || | || | || || Sbjct 215314 ACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGC-CATCCTC 215256 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || || || || | ||||| || || | || | ||| ||||| ||| Sbjct 215255 CAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTG 215196 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||||| | | || || || | || || ||||| | || |||||||| Sbjct 215195 AATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAACCTCGAGAGTGATCGTCTT 215136 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||||||| ||||| |||||||| Sbjct 215135 TCCGGTGAGGGTCTTGACGAATATTTGCAT 215106 >seq1483 Length=199378 Score = 95.1 bits (104), Expect = 9e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||||||||||||||| | || ||| | || || || ||||| || || |||| Sbjct 28634 CCTTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGA 28693 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||||||| || || || | || | || ||||| ||| ||||| ||| | | Sbjct 28694 TCAAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTAT 28753 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || ||||| | || || || |||| ||||| ||||| ||||| |||||||| |||| Sbjct 28754 CAATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGA 28813 Query 44328 AG 44329 || Sbjct 28814 AG 28815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982880025538