Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1406 140 8e-28 seq861 127 5e-24 >seq1406 Length=252419 Score = 140 bits (154), Expect = 8e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| |||||||| || ||||||||||| |||||||| Sbjct 214617 TCACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACCATCGATAACGTCAAGT 214676 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || ||||| || || || |||||||| | ||||| ||||||| Sbjct 214677 CCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGAA 214736 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | |||||||| || ||| | ||||| | ||||| ||| |||| || || || || || | Sbjct 214737 AGCAGCTCGAGGACGGACGTACTCTATCTGATTACAACATCCAGAAGGAGTCCACCCTCC 214796 Query 178123 ATCTTGT 178129 | || || Sbjct 214797 ACCTGGT 214803 Score = 132 bits (146), Expect = 1e-25 Identities = 152/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| ||||| |||||||| |||||||| || ||||| Sbjct 215109 CAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGTCTTCAGAT 215168 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||| || || || ||||| || ||||| || Sbjct 215169 ACTATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAACAG 215228 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||| || ||||| || || || | || ||||| | || |||| |||| || ||| | Sbjct 215229 CGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAAC-CTTGTCCGACTACAACAT 215287 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 |||||| || || ||||| ||| Sbjct 215288 CCAAAAGGAGTCCACACTTCAT 215309 Score = 113 bits (124), Expect = 1e-19 Identities = 138/187 (74%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||||||||| || ||| || || ||||| |||||||| Sbjct 214902 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACTATCGACAACGTCAAGTCG 214961 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| ||||| || || ||||| || ||||| || |||||||||| || || || Sbjct 214962 AAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAGAGACTTATCTTTGCTGGGAAG 215021 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || || || | || ||| | || || || ||||||| ||||| || || || Sbjct 215022 CAACTTGAGGACGGCCGCACCCTTTCGGACTACAATATCCAAAAGGAATCTACTCTACA- 215080 Query 178125 CTTGTTT 178131 |||| || Sbjct 215081 CTTGGTT 215087 >seq861 Length=344942 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||||||||| ||| ||||| || || || |||||| Sbjct 25376 TCACGGGCAAGACTATCACCCTCGAGGTCGAATCGAGTGACACGATTGATAATGTCAAAT 25435 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || ||||| || || || || ||||| || ||||||||||| | Sbjct 25436 CCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCA 25495 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 |||| |||||||| || | || || | || || ||| |||| || || ||||| || | Sbjct 25496 AACAACTCGAAGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCAACCCTTC 25555 Query 178123 ATCTTGTTTT 178132 |||| || || Sbjct 25556 ATCTCGTCTT 25565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203704765310516