Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq861 127 2e-24 seq1406 105 6e-18 >seq861 Length=344942 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || ||||||||||| || ||||| || || ||||||||| ||||| ||||| ||| Sbjct 25580 CCTCCACGTAGACGTAAGACGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGAG 25521 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||| || ||||||||||| || ||||| ||||| || | |||| Sbjct 25520 AGGGTGCGGCCGTCTTCGAGTTGTTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGA 25461 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | | |||||||||| ||| || Sbjct 25460 ATTCCCTCCTTGTCCTGGATCTT 25438 >seq1406 Length=252419 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| || || ||| ||||||||| ||||| || || || Sbjct 214821 CCGCCACGAAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAT 214762 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| ||||| || |||| || || || || | |||| Sbjct 214761 AGAGTACGTCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 214702 Query 41756 ACGCTCTCCTTGTCCATGATTTT----TTG-CTTCAACGACGACACAGTGTCGCTCGACT 41810 | | |||||||||| ||| || ||| | | | ||| | |||||| ||||| Sbjct 214701 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATG-----GTGTCGGACGACT 214647 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGT 41838 ||||||| | || || || ||||| || Sbjct 214646 CCACCTCAAGGGTGATAGTCTTACCGGT 214619 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || ||| |||||| || ||||| |||||||| Sbjct 215332 CCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAC 215273 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || | |||||||| ||||| || || ||||||||||| | || Sbjct 215272 AAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGG 215213 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||| ||| ||| | || | |||| || | | | ||| || ||||| | Sbjct 215212 ATACCCTCCTTATCC-TGAATCTTCGACTTC-ACATTGTCGATAGTATCTGAAGACTCAA 215155 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || ||||| || || || || ||||| ||||| || ||||| Sbjct 215154 CCTCGAGAGTGATCGTCTTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| |||| ||||||||||| || |||||||| ||| | Sbjct 215560 CCTCCACGCAGGCGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCTG 215501 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | |||||||||||||| |||| |||||||| || | || Sbjct 215500 AGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGG 215441 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| ||| ||| | | | | | ||||| ||||| || Sbjct 215440 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCA-ATGGTGTCCGAAGACTCAAC 215382 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || ||||||| ||||| ||||| |||||||| Sbjct 215381 TTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462294095136800