Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 116 8e-21 seq465 86.0 1e-11 >seq6 Length=114070 Score = 116 bits (128), Expect = 8e-21 Identities = 179/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || || || ||||| | || |||||||| | || ||| | || || ||| Sbjct 15436 ATCATCACCGAGGCTGTTGAGATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTG-CGC 15494 Query 230446 -CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 || | |||||||| | || ||| | ||||||||||| ||||| || |||||| | Sbjct 15495 TCTGCTCGGCATGAATTCCACCCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCT 15554 Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 | | || ||||| || || || |||||| | | |||||||| | || ||||| Sbjct 15555 GCTGTTGGCCCTTGGCAACACCAAGGTCTACAACGCCACCAACCCCTTCGACTTCATGGA 15614 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAG 230624 | ||| ||||| || ||||||||||||||||| ||||| ||| | || || |||| Sbjct 15615 GAACATCTCGCTCGCGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGATTACCAGAA 15674 Query 230625 GCCTGGTGTGATG 230637 | ||||||| ||| Sbjct 15675 GGCTGGTGTCATG 15687 >seq465 Length=132516 Score = 86.0 bits (94), Expect = 1e-11 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 305391 AAGAACGCGTCAAGAAAGGTGTGAGGAATTCTCTACTGACTGCTCTCATGCCAACCGCTA 305450 |||| ||| ||| | | |||||| | || ||||| ||| ||| | |||||| || || Sbjct 112610 AAGATCGC-TCA-GCATGGTGTGCGCAACTCTCTCCTGGTTGCGCCCATGCCTACTGCCT 112553 Query 305451 GCACTGCGCAAATTTGCGGGAGCGTAGAAGCATTTGAACCAATCACCTCGAACCTATATT 305510 ||| |||| ||| || | | || || || ||| |||||||||| | || | Sbjct 112552 CGACTTCGCAGATTCTTGGAAACAACGAGTGCTTCGAGCCATACACCTCGAACATCTACT 112493 Query 305511 CCCGCCGCACACTGGCCGGTGAGTTCCCAGTGGTCAACTCTTATCTCGTCAGAGAACTGA 305570 | || || ||||| |||||||||| || |||||| ||| ||| ||| || || Sbjct 112492 CACGTCGTGTGCTGGCTGGTGAGTTCCAGGTCGTCAACCCTTGGCTCCTCAAGGACCTCG 112433 Query 305571 TTGAACGTGGAACA-TGGAGTGAAAACATGAAGAACCAAATCATTGCAAACGGTGGCAGC 305629 | || | ||| | ||| ||| ||||||||||||| ||||||||| | ||||| | Sbjct 112432 TCGA-CATGGGTCTCTGGTCTGAGAACATGAAGAACCGTATCATTGCAGATGGTGGTTCC 112374 Query 305630 ATCCA 305634 ||||| Sbjct 112373 ATCCA 112369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057817616362730