Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq6 102 8e-17 >seq6 Length=114070 Score = 102 bits (112), Expect = 8e-17 Identities = 199/291 (68%), Gaps = 5/291 (2%) Strand=Plus/Minus Query 17228 TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCT 17287 ||| | || || || |||||||| || ||| | || ||||| ||||||||||| Sbjct 15069 TCGCTGATGTATGTGTCGATGAGGAGCGAGTATGTCTCTGAGTGGATGTTCTCCATCATA 15010 Query 17288 ATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC 17347 ||||| || ||||| |||||||| || || | ||||||||| || | |||| || || Sbjct 15009 ATCTGGAAGCCGTAGAAGCATCGTGCCTCTGGTATTTGAACCTCGCTGGAGAAGCGCTCG 14950 Query 17348 GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATG 17407 | || || ||||| |||||||| ||| |||||||| || || | | || ||| Sbjct 14949 ACGAGGTTCTCGTTGACGATGCCATCGGAGGCGGCGAAGAAGGCGAGAACGTGGGAGATG 14890 Query 17408 AAATATTTTTCGTC--CGGTGTAAGAAC--GCGCCAGTCCTTTAAATCTTTGGATATATC 17463 || | ||||| || || | | | | |||||| | | ||| ||||| | ||| Sbjct 14889 AAGAAACGCTCGTCGTCGTTG-AGGCGCTTGTTCCAGTCGTGGAGATCCTTGGACAGATC 14831 Query 17464 CACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCA 17514 | || |||| |||||| ||| ||| | ||||| || ||||| | ||| Sbjct 14830 AATCTCCTCGGCGGTCCAGAAAGAAGCTTCGGCCTTCTTGTACATTTGCCA 14780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517542552950280