Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq465 145 9e-30
seq6 82.4 9e-11
>seq465
Length=132516
Score = 145 bits (160), Expect = 9e-30
Identities = 455/694 (66%), Gaps = 22/694 (3%)
Strand=Plus/Plus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
||||| || || | || ||||| | | |||||| |||| || | |||||| |||||
Sbjct 113299 CCAGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTCATG 113358
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT--TTC 54098
|||||||| |||||||| || || || || || | | || || |||| | ||
Sbjct 113359 AAGAGATCGGGAATCCAGAGGGCGTAGAAGAGGTCACGAGCTC---GTACCTCTTCCTTA 113415
Query 54099 CTGTA-TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157
| || ||||| || || ||||| | | | ||| | ||||| || || | |||
Sbjct 113416 CCGTGGTTCTTGCGTAGGTCAAGGAAGCCGAATACATCCGCGTGCCATGGCTCGAGGTAG 113475
Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217
|||| | | | ||||| || ||||| || |||||||| | ||| | ||||||||| ||
Sbjct 113476 ATGGCGAAAGCACCAGGGCGCTTGTTGCCACCCTGATCGACGTAGCGAGCGGTGTTGTTG 113535
Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 54277
|| || | | ||| || || | ||||||||||| || ||||| || || |||
Sbjct 113536 TAGACACGGAGCATCGGGATGAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAGGAG 113595
Query 54278 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335
|| ||||||| || | | |||| || || || || || || | || ||||| |
Sbjct 113596 CCGGTGGCACGGATGCGGTGCACATTG--AGTCCAATGCCGCCAGCGGTCTTGGAGATCA 113653
Query 54336 ATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 54394
| || || ||| || | || || ||||| || || || || || ||| |||||| |
Sbjct 113654 ACGCACA-CGTCTTCAGTGTGTCGTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATG 113712
Query 54395 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454
|| || ||| ||||| || | |||||||| || || | ||||| || ||
Sbjct 113713 AGGAAGCAGGATGACATCTGAGGGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCA 113772
Query 54455 TGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC--- 54510
|| || || | |||| || | |||| | ||| ||||| || || || || ||
Sbjct 113773 TGTGTGAAGTACTTTTGCGACATGTAG-TCGTAGGTCTCAATGGCCTTCTCAATGTCTTC 113831
Query 54511 -CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 54569
|||| |||| || || ||||||||||| | ||||||||| || | || | | ||
Sbjct 113832 GCCATGGATG----CCAACGGCGACACGCATGAGCATGTGCTGTGGGCGCTCTGCAACCT 113887
Query 54570 TGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 54629
|| ||| || || | ||| || || | || || || ||||| | | |||
Sbjct 113888 TGCCGTTGATGCGGAGGAGGTATGAGCGCTCTAGCGTCTTGAAGCCAAAGAACTGGTAGT 113947
Query 54630 AAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663
||||| || || || | ||| | ||||||||
Sbjct 113948 TGAAGTCGCGGTCATATACAATGGCCGAGTTGAG 113981
>seq6
Length=114070
Score = 82.4 bits (90), Expect = 9e-11
Identities = 144/209 (69%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
||||| || ||| ||| | |||||||| | || | |||||||| || || ||
Sbjct 15383 CATGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGA 15324
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254
|| ||||| || || ||||| || ||||| || |||||||| || || || |||||
Sbjct 15323 CCTGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAAGAGCCGCTGAAGAAG 15264
Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT--- 24311
|| || || || || |||||||| | || | | || || || | | | | |
Sbjct 15263 ATACCCTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAAAGTGGAGTTCTTGTCTGAG 15204
Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTT 24340
|||||||| ||||||| |||||||||||
Sbjct 15203 ATCCACTTGAGAGCCCAGTCGGCCTTCTT 15175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593718104464080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |