Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq465 145 9e-30 seq6 82.4 9e-11 >seq465 Length=132516 Score = 145 bits (160), Expect = 9e-30 Identities = 455/694 (66%), Gaps = 22/694 (3%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | || ||||| | | |||||| |||| || | |||||| ||||| Sbjct 113299 CCAGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTCATG 113358 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT--TTC 54098 |||||||| |||||||| || || || || || | | || || |||| | || Sbjct 113359 AAGAGATCGGGAATCCAGAGGGCGTAGAAGAGGTCACGAGCTC---GTACCTCTTCCTTA 113415 Query 54099 CTGTA-TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157 | || ||||| || || ||||| | | | ||| | ||||| || || | ||| Sbjct 113416 CCGTGGTTCTTGCGTAGGTCAAGGAAGCCGAATACATCCGCGTGCCATGGCTCGAGGTAG 113475 Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217 |||| | | | ||||| || ||||| || |||||||| | ||| | ||||||||| || Sbjct 113476 ATGGCGAAAGCACCAGGGCGCTTGTTGCCACCCTGATCGACGTAGCGAGCGGTGTTGTTG 113535 Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 54277 || || | | ||| || || | ||||||||||| || ||||| || || ||| Sbjct 113536 TAGACACGGAGCATCGGGATGAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAGGAG 113595 Query 54278 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335 || ||||||| || | | |||| || || || || || || | || ||||| | Sbjct 113596 CCGGTGGCACGGATGCGGTGCACATTG--AGTCCAATGCCGCCAGCGGTCTTGGAGATCA 113653 Query 54336 ATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 54394 | || || ||| || | || || ||||| || || || || || ||| |||||| | Sbjct 113654 ACGCACA-CGTCTTCAGTGTGTCGTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATG 113712 Query 54395 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 || || ||| ||||| || | |||||||| || || | ||||| || || Sbjct 113713 AGGAAGCAGGATGACATCTGAGGGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCA 113772 Query 54455 TGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC--- 54510 || || || | |||| || | |||| | ||| ||||| || || || || || Sbjct 113773 TGTGTGAAGTACTTTTGCGACATGTAG-TCGTAGGTCTCAATGGCCTTCTCAATGTCTTC 113831 Query 54511 -CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 54569 |||| |||| || || ||||||||||| | ||||||||| || | || | | || Sbjct 113832 GCCATGGATG----CCAACGGCGACACGCATGAGCATGTGCTGTGGGCGCTCTGCAACCT 113887 Query 54570 TGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 54629 || ||| || || | ||| || || | || || || ||||| | | ||| Sbjct 113888 TGCCGTTGATGCGGAGGAGGTATGAGCGCTCTAGCGTCTTGAAGCCAAAGAACTGGTAGT 113947 Query 54630 AAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 ||||| || || || | ||| | |||||||| Sbjct 113948 TGAAGTCGCGGTCATATACAATGGCCGAGTTGAG 113981 >seq6 Length=114070 Score = 82.4 bits (90), Expect = 9e-11 Identities = 144/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 ||||| || ||| ||| | |||||||| | || | |||||||| || || || Sbjct 15383 CATGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGA 15324 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || || ||||| || ||||| || |||||||| || || || ||||| Sbjct 15323 CCTGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAAGAGCCGCTGAAGAAG 15264 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT--- 24311 || || || || || |||||||| | || | | || || || | | | | | Sbjct 15263 ATACCCTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAAAGTGGAGTTCTTGTCTGAG 15204 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTT 24340 |||||||| ||||||| ||||||||||| Sbjct 15203 ATCCACTTGAGAGCCCAGTCGGCCTTCTT 15175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718104464080