Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq113 125 6e-24
seq267 93.3 4e-14
>seq113
Length=382967
Score = 125 bits (138), Expect = 6e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || ||||| | ||||| | ||| | |||||||||||| || ||||| |||||||
Sbjct 361739 TTCCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 361798
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
||| || || ||||||| ||||| ||||| ||| | || | | |||||||||| |
Sbjct 361799 ACAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAG 361858
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | ||| |||||||| |||||| || || | | ||| || || | |||
Sbjct 361859 GAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATTGTGTCGGATGACTCTA 361918
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||| | || |||||||||||||| | ||| ||||| || || |||||
Sbjct 361919 CTTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007
||| || ||||| | |||||||| |||| ||| |||||||| |||||||| ||||| |
Sbjct 361512 TCCTCCACGCAGGCGGAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 361571
Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067
|| || || | ||||||||||| || || ||| | || || | |||||||||| ||
Sbjct 361572 GAGAGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGG 361631
Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127
| || ||||| || |||||| ||| || | | | | ||||| | |||
Sbjct 361632 GATACCCTCCTTATCCTGGATCTTCGATTTGACGTTGTCAATGGTATCGGATGACTCTAC 361691
Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
||| | || |||||||| || || | ||| ||||| || || ||||||
Sbjct 361692 TTCTAGCGTGATGGTCTTTCCAGTGAGCGTCTTGACGAAGATCTGCATT 361740
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | || |||||||| || ||||| ||||| |
Sbjct 361969 CCACCGCGGAGACGGAGGACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 362028
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || ||||||| ||||||||||| || | || | | |||||||||| |||
Sbjct 362029 AGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 362088
Query 21069 ACGCCTTCCTTGTCGGCG 21086
| ||| |||||||| |||
Sbjct 362089 ATGCCCTCCTTGTCTGCG 362106
>seq267
Length=290730
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||| | ||| | ||||||||||| || ||||| |||||||
Sbjct 207170 CCACCACGCAGGCGGAGCACTAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 207229
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | ||||| ||||| ||||| || | || || | |||||||||| |||
Sbjct 207230 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 207289
Query 21069 ACGCCTTCCTTGTC 21082
| ||| ||||||||
Sbjct 207290 ATGCCCTCCTTGTC 207303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422256776100236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |