Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6 212 6e-50 seq113 138 1e-27 seq267 120 3e-22 seq53 104 2e-17 >seq6 Length=114070 Score = 212 bits (234), Expect = 6e-50 Identities = 221/284 (78%), Gaps = 7/284 (2%) Strand=Plus/Plus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| |||||||| || || |||||||||| ||||||| | || |||||| Sbjct 14780 TGGCAAATGTACAAGAAGGCCGAAGCTTCTTTCTGGACCGCCGAGGAGATTGATCTGTCC 14839 Query 116699 AAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||||| | | | ||||||| | |||| | |||||| ||||||| |||||| || Sbjct 14840 AAGGATCTCCA-CGACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCTCCCA 14898 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||| || ||||| ||||||||| ||| ||||||||||||||||| || |||||||| || Sbjct 14899 CGTTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTCGTCGAGCGCTT 14958 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | | ||| ||||| || | | ||||| || |||||||||||||| ||||| |||| Sbjct 14959 CTC-CAGCGAGGTTCAAATACCAGAGGCACGATGCTTCTACGGCTTCCAGATTATGATGG 15017 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||| | ||||| || | || ||| |||||||||||| ||| Sbjct 15018 AGAACATCCACTCAGAGACATACTCGCTCCTCATCGACACATAC 15061 Score = 194 bits (214), Expect = 2e-44 Identities = 314/449 (70%), Gaps = 2/449 (0%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| || |||||| | | || | || | || | | | || | Sbjct 15176 AGAAGGCCGACTGGGCTCTCAAGTGGATCTCAGACAAGAACTCCACTTTTGCCAACCGTC 15235 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || ||||| || ||||| ||||| ||||||| ||| |||||| |||| || | Sbjct 15236 TCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCTTTCGCGTCCATCTTCT 15295 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| ||||| || ||||| || || || ||| |||||||||||||||| | | Sbjct 15296 GGCTCAAGAAGCGCGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTG 15355 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 ||||||| |||| ||||||||| || |||| ||| | | | || || | Sbjct 15356 ACGAGGGCATGCACACCGACTTTGCATGCCTGCTCTTCTCTCTTCTCAACACCCGCCCCA 15415 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || || ||||| || ||| ||||||| || || | || |||||| ||||||| Sbjct 15416 GCAAGGATGCCGTCAAGGCCATCATCACCGAGGCTGTTGAGATTGAGCAGGAGTTCCTCA 15475 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340 ||||||| || || |||| |||||| || | |||| | |||| || |||||| Sbjct 15476 CCGAAGCTCT-CCCCTGCGCTCTGCTCGGCATGAATTCCACCCTCATGTGCCAGTACATC 15534 Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400 ||||||||||| ||| | |||||| | | || | | | ||||| ||||||| | || Sbjct 15535 GAGTTCGTCGCTGACCGCCTGCTGTTGGCCCTTGGCAACACCAAGGTCTACAACGCCACC 15594 Query 117401 AACCCGCTGGACTTTATGAACCTCATCTC 117429 ||||| | ||||| ||| | |||||| Sbjct 15595 AACCCCTTCGACTTCATGGAGAACATCTC 15623 >seq113 Length=382967 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| ||||| |||||||| | || || || | || Sbjct 361967 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAAGTAGAGTCATCC 361908 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| |||||||| || ||||||| Sbjct 361907 GACACAATCGACAACG-TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCA 361849 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||| ||||| || |||| ||||| || |||||||| Sbjct 361848 GCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGTCGGACTACAA 361789 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| ||| ||||| || | || || Sbjct 361788 CATCCAGAAGGAGTCCACTCTACATCTCGTGCTGCGCCTGCGCGGAGG 361741 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || |||||||| || || |||||||| | || || || | | Sbjct 361740 AATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACCATCACGCTAGAAGTAGAGTCATC 361681 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | | | | |||| |||| || || | || || ||||| ||||| |||||| Sbjct 361680 CGATACCATTGACAACG-TCAAATCGAAGATCCAGGATAAGGAGGGTATCCCTCCGGACC 361622 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||||| || || || |||||||| || | ||||| ||| |||||||| Sbjct 361621 AGCAGCGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGCACTCTCTCCGACTACA 361562 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| ||||||||| | || ||||| | ||| | ||| || | || || Sbjct 361561 ACATTCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGCCTGCGTGGAGG 361513 Score = 114 bits (126), Expect = 1e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || | |||| ||| ||||||||||| || Sbjct 362102 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAACAGCTTGAG 362043 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| |||||||| |||||||||||||||||||||| | ||||| || || || Sbjct 362042 GACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGT 361987 >seq267 Length=290730 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || ||||||| ||| ||||| ||||| || Sbjct 207303 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 207244 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || ||||||||||||||||||||| |||| || ||||||||| | Sbjct 207243 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCATCTAGTGCTC 207184 Query 40903 CGCTTGAGGGGCGG 40916 ||| || | || || Sbjct 207183 CGCCTGCGTGGTGG 207170 >seq53 Length=59568 Score = 104 bits (114), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || || |||| ||| ||||| || || || Sbjct 12540 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAACTCGAG 12481 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || | |||||||| |||||||||||||||||||||| | || ||||| Sbjct 12480 GATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTGCA 12431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216166646960