Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq6 212 6e-50
seq113 138 1e-27
seq267 120 3e-22
seq53 104 2e-17
>seq6
Length=114070
Score = 212 bits (234), Expect = 6e-50
Identities = 221/284 (78%), Gaps = 7/284 (2%)
Strand=Plus/Plus
Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698
|||| |||||||| |||||||| || || |||||||||| ||||||| | || ||||||
Sbjct 14780 TGGCAAATGTACAAGAAGGCCGAAGCTTCTTTCTGGACCGCCGAGGAGATTGATCTGTCC 14839
Query 116699 AAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754
||||| | | | ||||||| | |||| | |||||| ||||||| |||||| ||
Sbjct 14840 AAGGATCTCCA-CGACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCTCCCA 14898
Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814
||| || ||||| ||||||||| ||| ||||||||||||||||| || |||||||| ||
Sbjct 14899 CGTTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTCGTCGAGCGCTT 14958
Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873
| | ||| ||||| || | | ||||| || |||||||||||||| ||||| ||||
Sbjct 14959 CTC-CAGCGAGGTTCAAATACCAGAGGCACGATGCTTCTACGGCTTCCAGATTATGATGG 15017
Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||| | ||||| || | || ||| |||||||||||| |||
Sbjct 15018 AGAACATCCACTCAGAGACATACTCGCTCCTCATCGACACATAC 15061
Score = 194 bits (214), Expect = 2e-44
Identities = 314/449 (70%), Gaps = 2/449 (0%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||||||||| ||||| || |||||| | | || | || | || | | | || |
Sbjct 15176 AGAAGGCCGACTGGGCTCTCAAGTGGATCTCAGACAAGAACTCCACTTTTGCCAACCGTC 15235
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
| || ||||| || ||||| ||||| ||||||| ||| |||||| |||| || |
Sbjct 15236 TCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCTTTCGCGTCCATCTTCT 15295
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||||||||| ||||| || ||||| || || || ||| |||||||||||||||| | |
Sbjct 15296 GGCTCAAGAAGCGCGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTG 15355
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
||||||| |||| ||||||||| || |||| ||| | | | || || |
Sbjct 15356 ACGAGGGCATGCACACCGACTTTGCATGCCTGCTCTTCTCTCTTCTCAACACCCGCCCCA 15415
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| || ||||| || ||| ||||||| || || | || |||||| |||||||
Sbjct 15416 GCAAGGATGCCGTCAAGGCCATCATCACCGAGGCTGTTGAGATTGAGCAGGAGTTCCTCA 15475
Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340
||||||| || || |||| |||||| || | |||| | |||| || ||||||
Sbjct 15476 CCGAAGCTCT-CCCCTGCGCTCTGCTCGGCATGAATTCCACCCTCATGTGCCAGTACATC 15534
Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400
||||||||||| ||| | |||||| | | || | | | ||||| ||||||| | ||
Sbjct 15535 GAGTTCGTCGCTGACCGCCTGCTGTTGGCCCTTGGCAACACCAAGGTCTACAACGCCACC 15594
Query 117401 AACCCGCTGGACTTTATGAACCTCATCTC 117429
||||| | ||||| ||| | ||||||
Sbjct 15595 AACCCCTTCGACTTCATGGAGAACATCTC 15623
>seq113
Length=382967
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || |||||||| ||||| |||||||| | || || || | ||
Sbjct 361967 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAAGTAGAGTCATCC 361908
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| || || | ||||| |||||||| || |||||||
Sbjct 361907 GACACAATCGACAACG-TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCA 361849
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| || ||||| ||||| || |||| ||||| || ||||||||
Sbjct 361848 GCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGTCGGACTACAA 361789
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||| |||| || ||||| ||| ||||| || | || ||
Sbjct 361788 CATCCAGAAGGAGTCCACTCTACATCTCGTGCTGCGCCTGCGCGGAGG 361741
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || ||||| || |||||||| || || |||||||| | || || || | |
Sbjct 361740 AATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACCATCACGCTAGAAGTAGAGTCATC 361681
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
||| | | | | |||| |||| || || | || || ||||| ||||| ||||||
Sbjct 361680 CGATACCATTGACAACG-TCAAATCGAAGATCCAGGATAAGGAGGGTATCCCTCCGGACC 361622
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || ||||||| || || || |||||||| || | ||||| ||| ||||||||
Sbjct 361621 AGCAGCGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGCACTCTCTCCGACTACA 361562
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||| ||||||||| | || ||||| | ||| | ||| || | || ||
Sbjct 361561 ACATTCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGCCTGCGTGGAGG 361513
Score = 114 bits (126), Expect = 1e-20
Identities = 95/116 (82%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| |||||||||| || | |||| ||| ||||||||||| ||
Sbjct 362102 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAACAGCTTGAG 362043
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||| |||||||| |||||||||||||||||||||| | ||||| || || ||
Sbjct 362042 GACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGT 361987
>seq267
Length=290730
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| |||||||||| || ||||||| ||| ||||| ||||| ||
Sbjct 207303 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 207244
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|| | ||||| || ||||||||||||||||||||| |||| || ||||||||| |
Sbjct 207243 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCATCTAGTGCTC 207184
Query 40903 CGCTTGAGGGGCGG 40916
||| || | || ||
Sbjct 207183 CGCCTGCGTGGTGG 207170
>seq53
Length=59568
Score = 104 bits (114), Expect = 2e-17
Identities = 89/110 (81%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| |||||||||| || || |||| ||| ||||| || || ||
Sbjct 12540 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAACTCGAG 12481
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| | |||||||| |||||||||||||||||||||| | || |||||
Sbjct 12480 GATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTGCA 12431
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515216166646960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |