Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq113 93.3 3e-14 seq53 89.7 4e-13 >seq113 Length=382967 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| ||||| ||||||||| |||||||||||| || ||| |||| || Sbjct 361987 ACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCA 362046 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || ||||| |||||||| ||||| ||||| ||||| || || | ||||||||||| || Sbjct 362047 AGCTGTTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTGC 362105 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || |||||||||||||||||||||| || ||| | || ||| Sbjct 361531 ACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCC 361590 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || ||||| || || || | ||||| ||||| ||||| | ||||||||| ||| Sbjct 361591 AGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCC 361647 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| ||||||||||| ||| ||| |||| || || || Sbjct 361765 TGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCAAGCTGC 361824 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || ||||| || ||||| ||||| ||||| ||||| | |||||||||||| || || Sbjct 361825 TTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTG 361884 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | |||| ||| || || | || || |||||||| || Sbjct 361885 CTCTTGACGTTGTCGATTGTGTCGGATGACTCTACTTCAAGCGTGATGGTCTTGCCGGTG 361944 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 361945 AGCGTCTTGACGAAGATCTGCAT 361967 >seq53 Length=59568 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||| |||||||||||| || ||| | || || Sbjct 12425 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCG 12484 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || |||||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 12485 AGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 12541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395072932144891