Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq465 354 7e-93 seq6 138 1e-27 seq113 86.0 6e-12 >seq465 Length=132516 Score = 354 bits (392), Expect = 7e-93 Identities = 1202/1858 (65%), Gaps = 48/1858 (3%) Strand=Plus/Plus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| ||||| || |||||||| ||||||| ||| | |||||| || ||||| || | Sbjct 112145 TGGTACGAAGGTAGTACATGCCGGTCTTCAAACCGAGCTTCCAGCCGGCGAAATGCATGG 112204 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 | || | || || | ||| | ||||| | || || |||||| ||||||| Sbjct 112205 AAGTGATCTTACCCATGGTGGGCTCCTTCATGTGGATGTTCAATGACTGAGATTGATCGA 112264 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322 | || || || || || || ||||| | || | |||||| ||| ||||||||||||| Sbjct 112265 TGAAGGCACCGCGGTCAGCAGCCATCTGGATGATGGTACGCTGCGAGATTTCCCATACGG 112324 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTAT 22382 ||||||| || | || ||||| || || ||||||||||| ||| || || Sbjct 112325 TCTTGTAAAGGGTCTTGGTCTCTTCTGGGATGTTGGGGATCCTCTGGATGGAACCACCAT 112384 Query 22383 TGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGA 22442 ||||| || || || | || ||| | ||| ||| || | || |||| Sbjct 112385 CTGCAATGATACGGTTCTTCATGTTCTCAGACCAGAGACCCATGTCGACGAGGTCCTTGA 112444 Query 22443 CCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGG 22502 || | |||| || || || ||||| || | || || || ||| ||| ||||| | Sbjct 112445 GGAGCCAAGGGTTGACGACCTGGAACTCACCAGCCAGCACACGACGTGAGTAGATGTTCG 112504 Query 22503 ATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCA 22562 | ||| | || ||||| | || |||||||| || ||||| | ||||| || || |||| Sbjct 112505 AGGTGTATGGCTCGAAGCACTCGTTGTTTCCAAGAATCTGCGAAGTCGAGGCAGTAGGCA 112564 Query 22563 TCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCG 22622 | ||||| | ||| || ||||| | || || |||| | || || ||| | | | Sbjct 112565 TGGGCGCAACCAGGAGAGAGTTGCGCACACCATGCTGAGCGATCTTGTCCTTCAACGAAG 112624 Query 22623 ACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAAC--ACGCC 22680 ||||||||| || || || || ||||| | |||| | |||||| || | | || | Sbjct 112625 CCCAGTCCCAAAGGTCAGAAGGAGTCAC---GCCCCAGAGATCGTACTGAAGCTGACCCT 112681 Query 22681 GCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCA 22740 ||| | || || ||||| || | || |||||| | ||| | ||||| Sbjct 112682 TGGACACA--GGCGAACCCTCGTATGTAGCATATGGACCAAGCTCCTTGGCGATATCGCA 112739 Query 22741 GCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA-TTC--GGC 22797 | || | | || ||| || || ||||||||||| | |||| | ||| ||| Sbjct 112740 GGACGACGTGAGAGCCGCGTGGTAAATTGTCTCGAAGATCTGGGTGTTGAGCTTCTTGGC 112799 Query 22798 GGCGG-CGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAA 22856 | | |||| || | |||| ||| | | ||| || || || | |||||||| Sbjct 112800 TTCAGTCGAC----TCAAAAGGCAGACGAAGGGCGAGGAAAGCATCAGCAAGACCCTGAA 112855 Query 22857 CGCCTATACCGATCGGTCGGTTTTTCAGATT----CGACACTTTTGCCTCGGGCAAAGGA 22912 | || | |||||| || | | | ||| || | |||||| || ||| Sbjct 112856 CACCAAGACCGATGGGCCTATGGCGGAAATTGCTGCGGCG----TGCCTCCTCCACAGGG 112911 Query 22913 TACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNN 22972 || || ||||| | |||| | ||| | || || | | || | Sbjct 112912 TAGTGGTTGACCTCGATGATCTTGTTGAGGTTACGTGTGACGACCATGGTCACCTCGTGG 112971 Query 22973 NNNNNNTCAAAGTCGTAAACGCC-CGATTGTA--CAACAAACTTGTTG--ACGGCGATCG 23027 | |||||| | |||| || ||||| | ||||| | || | ||||| | Sbjct 112972 AGCTTGTGGAAGTCGAACTCGCCACGCTTGTAGTCGACAAAG--GATGGAAGGGCGAGGG 113029 Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087 | || || ||||| ||||| ||||| || | ||| |||| ||||| || || || | Sbjct 113030 AAGCCAGGTTGCACACGGCGACCTCATCAGGAGCAGTGAACTCGACAATCTCAGTGCAGA 113089 Query 23088 GATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCT 23147 | ||| | || || || | || |||||||| || | ||||| | |||| Sbjct 113090 GGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGGACTTCCTGTTGCAAGCGTCCT 113149 Query 23148 TGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAG 23207 |||| |||||| |||| |||| ||||| ||||| ||||| || || ||| | Sbjct 113150 TGTACAGCATGAACGGGTTGCCAGTCTCAGTCTGCGCCTCGAGAATGGCGTACCAGAGCT 113209 Query 23208 TCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTC-----CTCGTACTTTTGGTACAA 23262 |||| || ||||| ||| | || ||| ||| ||| |||||| ||| | Sbjct 113210 TCTGGGCACGAACA-GTCTCGCG-ACC---CTTGTTCTCGCGCTCGTAACGGGTGTAGAG 113264 Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 | | || || || | ||||| |||||| || || || | | | || |||||||| Sbjct 113265 CTCCTCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAG 113324 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 ||||| || | || || || |||| || ||||| || ||||| || ||||| Sbjct 113325 TGTCCACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTA 113384 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 ||| || || || || || ||||| || || ||| |||||| | || | ||| | Sbjct 113385 GAAGAGGTCACGAGCTCGTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCC 113444 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || || ||||| ||||| ||||||||||| | ||| || || || || | ||| ||||| Sbjct 113445 GAATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCC 113504 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 |||||||||||||| || || ||||||||||| || | |||||||| | |||||| || Sbjct 113505 ACCCTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATT 113564 Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622 ||| | ||| ||| | | || || | || || | | ||| || | || Sbjct 113565 GGATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTGAG 113624 Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682 || ||||| || | | || || |||| ||| || ||||| ||||||||||| || Sbjct 113625 TCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCAGTGTGTCGTAGATACC 113684 Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742 |||||||||||||| || | ||| | ||| || || ||||| || | |||||||| Sbjct 113685 GTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGCGT 113744 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGT 23801 | || |||||| || || ||| || || ||||| | |||||| ||| | || Sbjct 113745 TCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAG-TCGT 113803 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 | || || ||||| |||||||| || || || || || | |||||| ||||| | || Sbjct 113804 AGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATGCCAACGGCGACACGCATGAGCA 113863 Query 23862 TGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918 ||| || || | || | ||| | |||||| || || || ||||| || | | Sbjct 113864 TGTGCTGTGGGCGCTCTGCAACCTT---GCCGTTGATGCGGAGGAGGTATGAGCGCTCTA 113920 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 ||| || || ||||| | | ||||| ||||| || || | || |||||||| || Sbjct 113921 GCGTCTTGAAGCCAAAGAACTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGAGTT 113978 >seq6 Length=114070 Score = 138 bits (152), Expect = 1e-27 Identities = 563/883 (64%), Gaps = 71/883 (8%) Strand=Plus/Plus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632 ||| | |||||||| ||||| ||||| || || ||||||| ||| || | || ||||| Sbjct 14780 TGGCAAATGTACAAGAAGGCCGAAGCTTCTTTCTGGACCGCCGAGGAGATTGATCTGTCC 14839 Query 57633 AAGGATCTGAGCGATTGGGATTC---CCTCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689 |||||||| ||| ||| | |||||| || ||| | || || ||| Sbjct 14840 AAGGATCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCTCCCAC 14899 Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749 || | || || |||||||| |||||||| || || |||||||| | ||||| | || Sbjct 14900 GTTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTCGTCGAGCGCTTC 14959 Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809 || || || ||| | | ||||| ||||||| ||||| || || | || || Sbjct 14960 TCCAGCGAGGTTCAAATACCAGAGGCACGATGCTTCTACGGCTTCCAGATTATGATGGAG 15019 Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTA------CGTG--AAGGA-- 57859 ||| | || ||||| | || ||||| |||||||| || || || | |||| Sbjct 15020 AACATCCACTCAGAGACATACTCGCTCCTCATCGACACATACATCAGCGAGCCAAGGCAG 15079 Query 57860 --------------CAACGAC---GAGAAACGTA-GACTGTTCAACG---CGATCGAAAC 57898 ||||| | || || ||| | | ||| || || | ||| Sbjct 15080 CGCACATACCTCTTCAACGCCATTGACAACAGTAAGTCACTTCCACCACACGCTTGAAGG 15139 Query 57899 AA--TGCC---CGCG--------------ATCGCCAAGAAGGCAGAGTGGTCAATCAAAT 57939 || || | |||| ||| ||||||||| || ||| | |||| | Sbjct 15140 AACGTGTCTAACGCGTCATAGTTCCATGCATCCGCAAGAAGGCCGACTGGGCTCTCAAGT 15199 Query 57940 GGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAG 57999 |||| | | | |||| || ||| | | || |||| || || ||||| || | Sbjct 15200 GGATCTCAGACAAGAACTCCACTTTTGCCAACCGTCTCGTCGCCTTTGCTGCCGTTGAGG 15259 Query 58000 GTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGC 58059 |||| ||||| ||| || ||| | || || ||| | ||||| ||||| ||||||| Sbjct 15260 GTATCTTCTTCAGCGGCTCTTTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGC 15319 Query 58060 CCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTG 58119 | || || || || ||||||| | || || || |||||||| | || || || |||| Sbjct 15320 CAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTG 15379 Query 58120 CGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGG----GATCGCATCTTGGAC 58175 | ||||| | | ||||| || |||| | ||| | | | ||| | || || | Sbjct 15380 CATGCCTGCTCTTCTCTC---TTCTCAACAC-CCGCCCCAGCAAGGATGCCGTCAAGGCC 15435 Query 58176 ATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCC 58235 || ||||||||||| || | ||| || | ||||| |||||||||| || || || Sbjct 15436 ATCATCACCGAGGCTGTTGAGATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCT 15495 Query 58236 ATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT 58295 ||||||| ||||| | |||| ||||||| ||||| || || ||| | || Sbjct 15496 CTGCTCGGCATGAATTCCACCCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTG 15555 Query 58296 TTGCTCGAACTGATTGG--AGAGC---GTCATTACAACACGAAAAATCCGTTTGATTTTA 58350 || | | | |||| | | | ||| |||||| | | || || || || || | Sbjct 15556 CTGTTGGCCC---TTGGCAACACCAAGGTC--TACAACGCCACCAACCCCTTCGACTTCA 15610 Query 58351 TGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || | |||||||||| ||||||||| ||||| ||||| || Sbjct 15611 TGGAGAACATCTCGCTCGCGGGCAAGACCAACTTCTTCGAGAA 15653 >seq113 Length=382967 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || ||||| | || || || | ||| Sbjct 361739 ATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACCATCACGCTAGAAGTAGAGTCATCC 361680 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | |||||| || || ||| ||||| || | || || |||||| Sbjct 361679 GATACCATTGACAACGTCAAATCGAAGATCCAGGATAAGGAGGGTATCCCTCCGGACCAG 361620 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| |||| || ||| | ||| || ||| Sbjct 361619 CAGCGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGCACTCTCTCCGACTACAAC 361560 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || |||||||| || |||| || Sbjct 361559 ATTCAGAAGGAGTCGACTCTGCACTTGGTGCT 361528 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || ||||| | || || || | ||| Sbjct 361967 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAAGTAGAGTCATCC 361908 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | ||||| ||| || | | ||||||||| ||| | || || ||| Sbjct 361907 GACACAATCGACAACGTCAA---GAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGAC 361851 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || || || ||||| ||| | || ||| || || || || Sbjct 361850 CAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGTCGGACTAC 361791 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| ||||| || || Sbjct 361790 AACATCCAGAAGGAGTCCACTCTACATCTCGTGCT 361756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763775550320