Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq465 354 7e-93
seq6 138 1e-27
seq113 86.0 6e-12
>seq465
Length=132516
Score = 354 bits (392), Expect = 7e-93
Identities = 1202/1858 (65%), Gaps = 48/1858 (3%)
Strand=Plus/Plus
Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202
|||| ||||| || |||||||| ||||||| ||| | |||||| || ||||| || |
Sbjct 112145 TGGTACGAAGGTAGTACATGCCGGTCTTCAAACCGAGCTTCCAGCCGGCGAAATGCATGG 112204
Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262
| || | || || | ||| | ||||| | || || |||||| |||||||
Sbjct 112205 AAGTGATCTTACCCATGGTGGGCTCCTTCATGTGGATGTTCAATGACTGAGATTGATCGA 112264
Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322
| || || || || || || ||||| | || | |||||| ||| |||||||||||||
Sbjct 112265 TGAAGGCACCGCGGTCAGCAGCCATCTGGATGATGGTACGCTGCGAGATTTCCCATACGG 112324
Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTAT 22382
||||||| || | || ||||| || || ||||||||||| ||| || ||
Sbjct 112325 TCTTGTAAAGGGTCTTGGTCTCTTCTGGGATGTTGGGGATCCTCTGGATGGAACCACCAT 112384
Query 22383 TGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGA 22442
||||| || || || | || ||| | ||| ||| || | || ||||
Sbjct 112385 CTGCAATGATACGGTTCTTCATGTTCTCAGACCAGAGACCCATGTCGACGAGGTCCTTGA 112444
Query 22443 CCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGG 22502
|| | |||| || || || ||||| || | || || || ||| ||| ||||| |
Sbjct 112445 GGAGCCAAGGGTTGACGACCTGGAACTCACCAGCCAGCACACGACGTGAGTAGATGTTCG 112504
Query 22503 ATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCA 22562
| ||| | || ||||| | || |||||||| || ||||| | ||||| || || ||||
Sbjct 112505 AGGTGTATGGCTCGAAGCACTCGTTGTTTCCAAGAATCTGCGAAGTCGAGGCAGTAGGCA 112564
Query 22563 TCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCG 22622
| ||||| | ||| || ||||| | || || |||| | || || ||| | | |
Sbjct 112565 TGGGCGCAACCAGGAGAGAGTTGCGCACACCATGCTGAGCGATCTTGTCCTTCAACGAAG 112624
Query 22623 ACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAAC--ACGCC 22680
||||||||| || || || || ||||| | |||| | |||||| || | | || |
Sbjct 112625 CCCAGTCCCAAAGGTCAGAAGGAGTCAC---GCCCCAGAGATCGTACTGAAGCTGACCCT 112681
Query 22681 GCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCA 22740
||| | || || ||||| || | || |||||| | ||| | |||||
Sbjct 112682 TGGACACA--GGCGAACCCTCGTATGTAGCATATGGACCAAGCTCCTTGGCGATATCGCA 112739
Query 22741 GCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA-TTC--GGC 22797
| || | | || ||| || || ||||||||||| | |||| | ||| |||
Sbjct 112740 GGACGACGTGAGAGCCGCGTGGTAAATTGTCTCGAAGATCTGGGTGTTGAGCTTCTTGGC 112799
Query 22798 GGCGG-CGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAA 22856
| | |||| || | |||| ||| | | ||| || || || | ||||||||
Sbjct 112800 TTCAGTCGAC----TCAAAAGGCAGACGAAGGGCGAGGAAAGCATCAGCAAGACCCTGAA 112855
Query 22857 CGCCTATACCGATCGGTCGGTTTTTCAGATT----CGACACTTTTGCCTCGGGCAAAGGA 22912
| || | |||||| || | | | ||| || | |||||| || |||
Sbjct 112856 CACCAAGACCGATGGGCCTATGGCGGAAATTGCTGCGGCG----TGCCTCCTCCACAGGG 112911
Query 22913 TACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNN 22972
|| || ||||| | |||| | ||| | || || | | || |
Sbjct 112912 TAGTGGTTGACCTCGATGATCTTGTTGAGGTTACGTGTGACGACCATGGTCACCTCGTGG 112971
Query 22973 NNNNNNTCAAAGTCGTAAACGCC-CGATTGTA--CAACAAACTTGTTG--ACGGCGATCG 23027
| |||||| | |||| || ||||| | ||||| | || | ||||| |
Sbjct 112972 AGCTTGTGGAAGTCGAACTCGCCACGCTTGTAGTCGACAAAG--GATGGAAGGGCGAGGG 113029
Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087
| || || ||||| ||||| ||||| || | ||| |||| ||||| || || || |
Sbjct 113030 AAGCCAGGTTGCACACGGCGACCTCATCAGGAGCAGTGAACTCGACAATCTCAGTGCAGA 113089
Query 23088 GATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCT 23147
| ||| | || || || | || |||||||| || | ||||| | ||||
Sbjct 113090 GGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGGACTTCCTGTTGCAAGCGTCCT 113149
Query 23148 TGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAG 23207
|||| |||||| |||| |||| ||||| ||||| ||||| || || ||| |
Sbjct 113150 TGTACAGCATGAACGGGTTGCCAGTCTCAGTCTGCGCCTCGAGAATGGCGTACCAGAGCT 113209
Query 23208 TCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTC-----CTCGTACTTTTGGTACAA 23262
|||| || ||||| ||| | || ||| ||| ||| |||||| ||| |
Sbjct 113210 TCTGGGCACGAACA-GTCTCGCG-ACC---CTTGTTCTCGCGCTCGTAACGGGTGTAGAG 113264
Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322
| | || || || | ||||| |||||| || || || | | | || ||||||||
Sbjct 113265 CTCCTCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAG 113324
Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382
||||| || | || || || |||| || ||||| || ||||| || |||||
Sbjct 113325 TGTCCACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTA 113384
Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442
||| || || || || || ||||| || || ||| |||||| | || | ||| |
Sbjct 113385 GAAGAGGTCACGAGCTCGTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCC 113444
Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502
|| || ||||| ||||| ||||||||||| | ||| || || || || | ||| |||||
Sbjct 113445 GAATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCC 113504
Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562
|||||||||||||| || || ||||||||||| || | |||||||| | |||||| ||
Sbjct 113505 ACCCTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATT 113564
Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622
||| | ||| ||| | | || || | || || | | ||| || | ||
Sbjct 113565 GGATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTGAG 113624
Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682
|| ||||| || | | || || |||| ||| || ||||| ||||||||||| ||
Sbjct 113625 TCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCAGTGTGTCGTAGATACC 113684
Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742
|||||||||||||| || | ||| | ||| || || ||||| || | ||||||||
Sbjct 113685 GTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGCGT 113744
Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGT 23801
| || |||||| || || ||| || || ||||| | |||||| ||| | ||
Sbjct 113745 TCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAG-TCGT 113803
Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861
| || || ||||| |||||||| || || || || || | |||||| ||||| | ||
Sbjct 113804 AGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATGCCAACGGCGACACGCATGAGCA 113863
Query 23862 TGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918
||| || || | || | ||| | |||||| || || || ||||| || | |
Sbjct 113864 TGTGCTGTGGGCGCTCTGCAACCTT---GCCGTTGATGCGGAGGAGGTATGAGCGCTCTA 113920
Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
||| || || ||||| | | ||||| ||||| || || | || |||||||| ||
Sbjct 113921 GCGTCTTGAAGCCAAAGAACTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGAGTT 113978
>seq6
Length=114070
Score = 138 bits (152), Expect = 1e-27
Identities = 563/883 (64%), Gaps = 71/883 (8%)
Strand=Plus/Plus
Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632
||| | |||||||| ||||| ||||| || || ||||||| ||| || | || |||||
Sbjct 14780 TGGCAAATGTACAAGAAGGCCGAAGCTTCTTTCTGGACCGCCGAGGAGATTGATCTGTCC 14839
Query 57633 AAGGATCTGAGCGATTGGGATTC---CCTCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689
|||||||| ||| ||| | |||||| || ||| | || || |||
Sbjct 14840 AAGGATCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCTCCCAC 14899
Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749
|| | || || |||||||| |||||||| || || |||||||| | ||||| | ||
Sbjct 14900 GTTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTCGTCGAGCGCTTC 14959
Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809
|| || || ||| | | ||||| ||||||| ||||| || || | || ||
Sbjct 14960 TCCAGCGAGGTTCAAATACCAGAGGCACGATGCTTCTACGGCTTCCAGATTATGATGGAG 15019
Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTA------CGTG--AAGGA-- 57859
||| | || ||||| | || ||||| |||||||| || || || | ||||
Sbjct 15020 AACATCCACTCAGAGACATACTCGCTCCTCATCGACACATACATCAGCGAGCCAAGGCAG 15079
Query 57860 --------------CAACGAC---GAGAAACGTA-GACTGTTCAACG---CGATCGAAAC 57898
||||| | || || ||| | | ||| || || | |||
Sbjct 15080 CGCACATACCTCTTCAACGCCATTGACAACAGTAAGTCACTTCCACCACACGCTTGAAGG 15139
Query 57899 AA--TGCC---CGCG--------------ATCGCCAAGAAGGCAGAGTGGTCAATCAAAT 57939
|| || | |||| ||| ||||||||| || ||| | |||| |
Sbjct 15140 AACGTGTCTAACGCGTCATAGTTCCATGCATCCGCAAGAAGGCCGACTGGGCTCTCAAGT 15199
Query 57940 GGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAG 57999
|||| | | | |||| || ||| | | || |||| || || ||||| || |
Sbjct 15200 GGATCTCAGACAAGAACTCCACTTTTGCCAACCGTCTCGTCGCCTTTGCTGCCGTTGAGG 15259
Query 58000 GTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGC 58059
|||| ||||| ||| || ||| | || || ||| | ||||| ||||| |||||||
Sbjct 15260 GTATCTTCTTCAGCGGCTCTTTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGC 15319
Query 58060 CCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTG 58119
| || || || || ||||||| | || || || |||||||| | || || || ||||
Sbjct 15320 CAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTG 15379
Query 58120 CGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGG----GATCGCATCTTGGAC 58175
| ||||| | | ||||| || |||| | ||| | | | ||| | || || |
Sbjct 15380 CATGCCTGCTCTTCTCTC---TTCTCAACAC-CCGCCCCAGCAAGGATGCCGTCAAGGCC 15435
Query 58176 ATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCC 58235
|| ||||||||||| || | ||| || | ||||| |||||||||| || || ||
Sbjct 15436 ATCATCACCGAGGCTGTTGAGATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCT 15495
Query 58236 ATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT 58295
||||||| ||||| | |||| ||||||| ||||| || || ||| | ||
Sbjct 15496 CTGCTCGGCATGAATTCCACCCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTG 15555
Query 58296 TTGCTCGAACTGATTGG--AGAGC---GTCATTACAACACGAAAAATCCGTTTGATTTTA 58350
|| | | | |||| | | | ||| |||||| | | || || || || || |
Sbjct 15556 CTGTTGGCCC---TTGGCAACACCAAGGTC--TACAACGCCACCAACCCCTTCGACTTCA 15610
Query 58351 TGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393
|| | |||||||||| ||||||||| ||||| ||||| ||
Sbjct 15611 TGGAGAACATCTCGCTCGCGGGCAAGACCAACTTCTTCGAGAA 15653
>seq113
Length=382967
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || || || || ||||| | || || || | |||
Sbjct 361739 ATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACCATCACGCTAGAAGTAGAGTCATCC 361680
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | |||||| || || ||| ||||| || | || || ||||||
Sbjct 361679 GATACCATTGACAACGTCAAATCGAAGATCCAGGATAAGGAGGGTATCCCTCCGGACCAG 361620
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || || ||||| || ||| |||| || ||| | ||| || |||
Sbjct 361619 CAGCGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGCACTCTCTCCGACTACAAC 361560
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || |||||||| || |||| ||
Sbjct 361559 ATTCAGAAGGAGTCGACTCTGCACTTGGTGCT 361528
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/215 (69%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || ||||| || ||||| | || || || | |||
Sbjct 361967 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAAGTAGAGTCATCC 361908
Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309
|||| |||| | ||||| ||| || | | ||||||||| ||| | || || |||
Sbjct 361907 GACACAATCGACAACGTCAA---GAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGAC 361851
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||||| | || || || ||||| ||| | || ||| || || || ||
Sbjct 361850 CAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGTCGGACTAC 361791
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || || ||||| ||||| || ||
Sbjct 361790 AACATCCAGAAGGAGTCCACTCTACATCTCGTGCT 361756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445763775550320
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