Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq465 152 6e-32 seq6 96.9 4e-15 >seq465 Length=132516 Score = 152 bits (168), Expect = 6e-32 Identities = 410/616 (67%), Gaps = 22/616 (4%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 |||||||| || || | || | | | | | ||| || || | || ||||| | | | Sbjct 113269 TCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGTGTC 113328 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 ||||| |||| || | |||||| ||||| |||||||| |||||||| || || || Sbjct 113329 CACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTAGAAG 113388 Query 63309 AGATCTCTTGTTCTATGTTCCTCGT--TTCCTGTA-TTCTTTTTAAGATCGAGGAACGCC 63365 || || | | || || |||| | || | || ||||| || || ||||| | Sbjct 113389 AGGTCACGAGCTC---GTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCCG 113445 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | | ||| | ||||| || || | ||| ||||| | | | ||||| || ||||| || Sbjct 113446 AATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCA 113505 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 |||||||| | ||| | ||||||||| || || || | | ||| || || | ||| || Sbjct 113506 CCCTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTG 113565 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TACTAATTGATA 63543 ||| | || ||||| || || ||| || ||||||| || | | ||||| Sbjct 113566 GATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTGA-- 113623 Query 63544 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTGTCATAGATG 63602 | || || || || || | || ||||| || || || ||| || | ||||| ||||| Sbjct 113624 GTCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACA-CGTCTTCAGTGTGTCGTAGATA 113682 Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTA 63662 || || ||||| || || |||||| | || || ||| ||||| || | | Sbjct 113683 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGC 113742 Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATT 63721 |||||||| || || | ||||| || || || || || | |||| || | |||| | Sbjct 113743 GTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAG-TC 113801 Query 63722 GTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCA 63777 ||| |||||||| || || || || |||| |||| || || |||||||||| Sbjct 113802 GTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATG----CCAACGGCGACACGCA 113857 Query 63778 TTAACATGTGCTGAGG 63793 | | ||||||||| || Sbjct 113858 TGAGCATGTGCTGTGG 113873 >seq6 Length=114070 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 ||||| || ||| ||||| |||||||| | || | ||||| || || || || Sbjct 15383 CATGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGA 15324 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || ||||| ||||| || ||| |||||| Sbjct 15323 CCTGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAAGAGCCGCTGAAGAAG 15264 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGT 33758 || || || || ||||||||||| | || | | || || || | |||| Sbjct 15263 ATACCCTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAAAGTGGAGTTCTTGTCTGAG 15204 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 |||||||| ||||||| ||||||||||| Sbjct 15203 ATCCACTTGAGAGCCCAGTCGGCCTTCTT 15175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813891948880