Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq465 149 8e-31 >seq465 Length=132516 Score = 149 bits (164), Expect = 8e-31 Identities = 474/724 (65%), Gaps = 22/724 (3%) Strand=Plus/Plus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 |||||||| || || | || | | | | ||||| || || | || ||||| | | | Sbjct 113269 TCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGTGTC 113328 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 ||||| |||| || | |||||| ||||| |||||||| |||||||| || || || Sbjct 113329 CACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTAGAAG 113388 Query 66102 AAATCTCTGGTTCTATGTTCCTCGT--TTCCTGTA-TTCTTTTTAAGATCGAGGAACGCC 66158 | || | | || || |||| | || | || ||||| || || ||||| | Sbjct 113389 AGGTCACGAGCTC---GTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCCG 113445 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | | ||| ||||| || || | ||| ||||| | | | ||||| || ||||| || Sbjct 113446 AATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCA 113505 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278 |||||||| | ||| | ||||||||| || || || | | ||| || || | ||||||| Sbjct 113506 CCCTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTG 113565 Query 66279 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAATTGATA 66336 ||||| || ||||| || || ||| || | ||||| || | | |||| | Sbjct 113566 GATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTG--A 113623 Query 66337 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATG 66395 | || || || || || | || ||||| || || || ||| || | || || ||||| Sbjct 113624 GTCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACA-CGTCTTCAGTGTGTCGTAGATA 113682 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455 || || || || || ||| |||||| | || || ||| ||||| || | Sbjct 113683 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGC 113742 Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATT 66514 |||||||| || || | ||||| || || || || || | |||| || | |||| | Sbjct 113743 GTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAG-TC 113801 Query 66515 GTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCA 66570 ||| |||||||| || || || || |||| |||| || || |||||||||| Sbjct 113802 GTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATG----CCAACGGCGACACGCA 113857 Query 66571 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 66630 | | ||||||||| || | || | | |||| ||| || | | ||| || | Sbjct 113858 TGAGCATGTGCTGTGGGCGCTCTGCAACCTTGCCGTTGATGCGGAGGAGGTATGAGCGCT 113917 Query 66631 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 66690 | | || || || ||||| | | ||| ||||| || || || | ||| |||||| Sbjct 113918 CTAGCGTCTTGAAGCCAAAGAACTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGAGT 113977 Query 66691 TGAG 66694 |||| Sbjct 113978 TGAG 113981 Score = 120 bits (132), Expect = 4e-22 Identities = 303/460 (66%), Gaps = 3/460 (1%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||| |||||||| || |||| | ||||| || |||||||| || || || | | Sbjct 112117 GTGAATTGGATGGGAGCAGAGGCGGCCATGGTACGAAGGTAGTACATGCCGGTCTTCAAA 112176 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 ||||| |||| ||| |||||||| || | || | || || || Sbjct 112177 CCGAGCTTCCAGCCGGCGAAATGCATGGAAGTGATCTTACCCATGGTGGGCTCCTTCATG 112236 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 ||||| |||| || ||| ||||||||||||||| || | ||| |||||||| | ||| Sbjct 112237 TGGATGTTCAATGACTGAGATTGATCGATGAAGGCACCGCGGTCAGCAGCCATCTGGATG 112296 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || || || | |||||||| | || || |||| ||| | |||||||| | | Sbjct 112297 ATGGTACGCTGCGAGATTTCCCATACGGTCTTGTAAAGGGTCTTGGTCTCTTCTGGGATG 112356 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | | |||| ||||| ||||||||||| || || | ||||| || | ||| | Sbjct 112357 TTGGGGATCCTCTGGATGGAACCACCATCTGCAATGATACGGTTCTTCATGTTCTCAGAC 112416 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || | | ||| | | | ||||| || || || || || || || ||| Sbjct 112417 CAGAGACCCATGTCGACGAGGTCCTTGAGGAGCCAAGGGTTGACGACCTGGAACTCACCA 112476 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 | || || | || | ||| || || ||| || || || | |||| || ||||| Sbjct 112477 GCCAGCACACGACGTGAGTAGATGTTCGAGGTGTATGGCTCGAAGCACTCGTTGTTTCCA 112536 Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 65295 | ||| || | ||| || ||||| ||||| || || |||| Sbjct 112537 AGAATCTGCGAAGTCGAGGCAGTAGGCATGGGCGCAACCA 112576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168925007640