Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-19 seq113 87.8 2e-12 >seq6 Length=114070 Score = 109 bits (120), Expect = 5e-19 Identities = 339/522 (65%), Gaps = 21/522 (4%) Strand=Plus/Plus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 ||||| || | ||||| |||| || ||||| | || |||||| | || | || || Sbjct 15160 GTTCCATGCATCCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCAGACAAGAACTCC 15219 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 ||||||||| | ||||| ||||| |||||| || || ||| | || || || | Sbjct 15220 ACTTTTGCCAACCGTCTCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCT 15279 Query 52669 TTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727 || ||| | || || | |||| || | || | | ||||| || || || || ||| Sbjct 15280 TTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGTC-TGATGCCAGGTCTTACCTTCTCCAA 15338 Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG--------TAT 52779 |||| | || || || ||||| || |||||||| || ||||| || || | | Sbjct 15339 CGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCATGCCTGCTCTTCTCTCT 15398 Query 52780 TATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAG 52839 | | | || | || || || || | | || | ||| | | ||| Sbjct 15399 TCTCA-ACACCCGCCCCAGCAAGGATGCCGTC------AAGGC----CATCATCACCGAG 15447 Query 52840 GCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATG 52899 || || || ||||| | ||||| | || || ||| | ||| | || | |||||| Sbjct 15448 GCTGTTGAGATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCTCTGCTCGGCATG 15507 Query 52900 AACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTC 52959 || | ||| | |||||| ||||||||||||| || || ||| | ||| || || || Sbjct 15508 AATTCCACCCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTGCTGTTGGCCCTT 15567 Query 52960 GGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTC 53019 || | | || ||| || || |||||||| || ||| | ||||| |||||| Sbjct 15568 GGCAACACCAAGGTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTC 15627 Query 53020 GAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 | |||||| || ||||| ||||||| || || ||||| ||| Sbjct 15628 GCGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGATTAC 15669 >seq113 Length=382967 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| ||| || ||||| || || Sbjct 361771 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCAAGCTGCTTGCCG 361830 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| || ||||| || ||||| ||||| || ||||| ||| || || Sbjct 361831 GCAAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 361890 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||||| | ||| || |||| || | ||||||||||| | ||| Sbjct 361891 ACGTTGTCGATTGTGTCGGATGACTCTACTTCAAGCGTGATGGTCTTGCCGGTGAGCGTC 361950 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 361951 TTGACGAAGATCTGCATA 361968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061079423200