Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq6 109 5e-19
seq113 87.8 2e-12
>seq6
Length=114070
Score = 109 bits (120), Expect = 5e-19
Identities = 339/522 (65%), Gaps = 21/522 (4%)
Strand=Plus/Plus
Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608
||||| || | ||||| |||| || ||||| | || |||||| | || | || ||
Sbjct 15160 GTTCCATGCATCCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCAGACAAGAACTCC 15219
Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668
||||||||| | ||||| ||||| |||||| || || ||| | || || || |
Sbjct 15220 ACTTTTGCCAACCGTCTCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCT 15279
Query 52669 TTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727
|| ||| | || || | |||| || | || | | ||||| || || || || |||
Sbjct 15280 TTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGTC-TGATGCCAGGTCTTACCTTCTCCAA 15338
Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG--------TAT 52779
|||| | || || || ||||| || |||||||| || ||||| || || | |
Sbjct 15339 CGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCATGCCTGCTCTTCTCTCT 15398
Query 52780 TATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAG 52839
| | | || | || || || || | | || | ||| | | |||
Sbjct 15399 TCTCA-ACACCCGCCCCAGCAAGGATGCCGTC------AAGGC----CATCATCACCGAG 15447
Query 52840 GCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATG 52899
|| || || ||||| | ||||| | || || ||| | ||| | || | ||||||
Sbjct 15448 GCTGTTGAGATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCTCTGCTCGGCATG 15507
Query 52900 AACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTC 52959
|| | ||| | |||||| ||||||||||||| || || ||| | ||| || || ||
Sbjct 15508 AATTCCACCCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTGCTGTTGGCCCTT 15567
Query 52960 GGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTC 53019
|| | | || ||| || || |||||||| || ||| | ||||| ||||||
Sbjct 15568 GGCAACACCAAGGTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTC 15627
Query 53020 GAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061
| |||||| || ||||| ||||||| || || ||||| |||
Sbjct 15628 GCGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGATTAC 15669
>seq113
Length=382967
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || || || |||| ||| || ||||| || ||
Sbjct 361771 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCAAGCTGCTTGCCG 361830
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||||| || ||||| || ||||| ||||| || ||||| ||| || ||
Sbjct 361831 GCAAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 361890
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | |||||||| | ||| || |||| || | ||||||||||| | |||
Sbjct 361891 ACGTTGTCGATTGTGTCGGATGACTCTACTTCAAGCGTGATGGTCTTGCCGGTGAGCGTC 361950
Query 139748 TTTACGAATATTTGCATA 139765
|| ||||| || ||||||
Sbjct 361951 TTGACGAAGATCTGCATA 361968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496061079423200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |