Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq465 232 1e-55 seq6 105 1e-17 >seq465 Length=132516 Score = 232 bits (256), Expect = 1e-55 Identities = 1140/1784 (64%), Gaps = 63/1784 (4%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| |||||||| || |||| | ||||| || |||||||| || || || | | Sbjct 112117 GTGAATTGGATGGGAGCAGAGGCGGCCATGGTACGAAGGTAGTACATGCCGGTCTTCAAA 112176 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 ||||| |||| ||| ||||||||| || | || | || || || Sbjct 112177 CCGAGCTTCCAGCCGGCGAAATGCATGGAAGTGATCTTACCCATGGTGGGCTCCTTCATG 112236 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 ||||| |||| || ||| ||||||||||||||| || | ||| |||||||| | ||| Sbjct 112237 TGGATGTTCAATGACTGAGATTGATCGATGAAGGCACCGCGGTCAGCAGCCATCTGGATG 112296 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || || | |||||||| | || || |||| ||| | |||||||| | | Sbjct 112297 ATGGTACGCTGCGAGATTTCCCATACGGTCTTGTAAAGGGTCTTGGTCTCTTCTGGGATG 112356 Query 78958 TTTGT-AT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | || |||| ||||| ||||||||||| || || | ||||| || | ||| | Sbjct 112357 TTGGGGATCCTCTGGATGGAACCACCATCTGCAATGATACGGTTCTTCATGTTCTCAGAC 112416 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || | | ||| | | | ||||| || || || || || || || ||| Sbjct 112417 CAGAGACCCATGTCGACGAGGTCCTTGAGGAGCCAAGGGTTGACGACCTGGAACTCACCA 112476 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | || || | || | ||| || || ||| ||||| || | | || || ||||| Sbjct 112477 GCCAGCACACGACGTGAGTAGATGTTCGAGGTGTATGGCTCGAAGCACTCGTTGTTTCCA 112536 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 | ||| || | ||| || || || ||||| || || |||| | | || | | ||| Sbjct 112537 AGAATCTGCGAAGTCGAGGCAGTAGGCATGGGCGCAACCAGGAGAGAGTTGCGCACACCA 112596 Query 79195 TA-TGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATT 79253 | ||| | ||| || || || | || |||| |||||||| ||||| || || Sbjct 112597 TGCTGAGC-GATCTTGTCCTTCAACGAAGCCCAGTCCCAAAGGTCAGAAGGAGTCACGCC 112655 Query 79254 CCAAAGATCATATTGTAGAATACCGTT----ACTAGCGTATGATCCTGTGTATGTTTCAT 79309 ||| ||||| || || || ||| || || ||| | || |||||| ||| Sbjct 112656 CCAGAGATCGTACTGAAGCTGACCCTTGGACACAGGCGAACCCTC----GTATGTAGCAT 112711 Query 79310 AAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTT 79369 | || || || | ||| | || || || | | || ||| ||||| || | Sbjct 112712 ATGGACCAAGCTCCTTGGCGATATCGCAGGACGACGTGAGAGCCGCGTGGTAAATTGTCT 112771 Query 79370 CGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTA-TCAAATGGATAATTTAAGAG 79427 |||| |||| | ||||| | |||| ||||| || | | ||||| || | | | Sbjct 112772 CGAAGATCTGGGTGTTGAGCTTCTTG-GCTTC-AGTCGACTCAAAAGGCAGACGAAGGGC 112829 Query 79428 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 79487 | || || || || | || |||||||||| |||||| || ||||| | || Sbjct 112830 GAGGAAAGCATCAGCAAGACCCTGAACACCAAGACCGATGGGCCTATGGCG-------GA 112882 Query 79488 AATTTCAGCTTCTGGAAT-------AGGATAATAATTAATATCTATAATTTTATTGAGAT 79540 |||| | || | | | ||| || | || | || || || || ||||| | Sbjct 112883 AATTGCTGCGGCGTGCCTCCTCCACAGGGTAGTGGTTGACCTCGATGATCTTGTTGAGGT 112942 Query 79541 TCC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-TCGTC---CA 79593 | | |||| | | || ||| || | || ||| | || || || ||| | | Sbjct 112943 TACGTGTGACGACCA---TGGTCACCTCGTGGAGCTTGTGGAAGTCGAACTCGCCACGCT 112999 Query 79594 TCTATT--ACAAAC-ATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTA 79650 | || | ||||| ||| | |||| || ||||| || || ||||| ||||||| | Sbjct 113000 TGTAGTCGACAAAGGATGGA-AGGGCGAGGGAAGCCAGGTTGCACACGGCGACCTCATCA 113058 Query 79651 GCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTT 79710 | | | | | | | || |||||||||||||| | |||||| || | || Sbjct 113059 GGAGCAGTGAACTCGACAATCTCAGTGCAGAGGTTGGAGCTGCGAATGGTACCGAGGTTC 113118 Query 79711 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCA 79770 | || || ||| |||| || || ||||| || || |||||||| | ||||| ||| Sbjct 113119 TTCTGGTTGGACTTCCTGTTGCAAGCGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCA 113178 Query 79771 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTC 79830 |||| | || | ||| || | ||||| | || | | | | || || | | | Sbjct 113179 GTCTGCGCCTCGAGAATGGCGTACCAGA-GCTTCTGGGCACGA--ACAGTCTCGCGACCC 113235 Query 79831 TT-TTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCT 79887 || ||||| ||||| | || || | |||||||| || || | || ||| | Sbjct 113236 TTGTTCTCGCGCTCGTAACGGGTGTAGAGCTCCTCGAACTCATCGCCGTAGACGTCGGCA 113295 Query 79888 AATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTC 79947 | ||||| || |||| || ||||| | | |||||| || | || | ||||| ||| Sbjct 113296 AGACCAGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTC 113355 Query 79948 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTT 80007 || |||||||| |||||||| || || || || || | | || ||| || || Sbjct 113356 ATGAAGAGATCGGGAATCCAGAGGGCGTAGAAGAGGTCACGAGCTCGTACCTCTTCCTTA 113415 Query 80008 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 80067 || ||||| || || ||||| | | | ||| | ||||| || || | ||| Sbjct 113416 CCGTGGTTCTTGCGTAGGTCAAGGAAGCCGAATACATCCGCGTGCCATGGCTCGAGGTAG 113475 Query 80068 ATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 80127 ||||| | | | || || || ||||| || |||||||| | ||| | ||||||||| || Sbjct 113476 ATGGCGAAAGCACCAGGGCGCTTGTTGCCACCCTGATCGACGTAGCGAGCGGTGTTGTTG 113535 Query 80128 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 80187 || || | | ||| || || | |||||||||||| || ||||| || || ||| Sbjct 113536 TAGACACGGAGCATCGGGATGAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAGGAG 113595 Query 80188 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 80245 || ||||||| || | | |||| || || || || || || | || ||||| | Sbjct 113596 CCGGTGGCACGGATGCGGTGCACATTG--AGTCCAATGCCGCCAGCGGTCTTGGAGATCA 113653 Query 80246 ATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGT 80304 | || || ||| || | || || ||||| || || ||||| || || |||||| | Sbjct 113654 ACGCACA-CGTCTTCAGTGTGTCGTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATG 113712 Query 80305 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 80364 || || ||| ||||| || | |||||||| || || | ||||| || || Sbjct 113713 AGGAAGCAGGATGACATCTGAGGGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCA 113772 Query 80365 TGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 80423 || || || | |||| |||| |||| | ||| |||||||| || |||| || | Sbjct 113773 TGTGTGAAGTACTTTTGCGACATGTAG-TCGTAGGTCTCAATGGC--CTTCTCAATGTCT 113829 Query 80424 TTG--ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGG 80465 | | ||| || || || ||||||||||| | ||||||||| || Sbjct 113830 TCGCCATGGATGCCAACGGCGACACGCATGAGCATGTGCTGTGG 113873 >seq6 Length=114070 Score = 105 bits (116), Expect = 1e-17 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 ||||| || ||| ||||| |||||||| | || || |||||||| || || || Sbjct 15383 CATGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGA 15324 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || || ||||| || ||||| || |||||||| || || || |||||| Sbjct 15323 CCTGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAAGAGCCGCTGAAGAAG 15264 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT--- 50136 || || || || || |||||||| || || | | || || ||| | | | | | Sbjct 15263 ATACCCTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAAAGTGGAGTTCTTGTCTGAG 15204 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 |||||||| ||||||| ||||||||||| Sbjct 15203 ATCCACTTGAGAGCCCAGTCGGCCTTCTT 15175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264571192440