Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq465 159 5e-34 >seq465 Length=132516 Score = 159 bits (176), Expect = 5e-34 Identities = 556/854 (65%), Gaps = 18/854 (2%) Strand=Plus/Plus Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 || ||||| || || ||||| ||||||| || | | | | | | ||| |||||||| Sbjct 113029 GAAGCCAGGTTGCACACGGCGACCTCATCAGGAGCAGTGAACTCGACAATCTCAGTGCAG 113088 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 || || | ||||| || | || | || || ||| |||| || || ||| Sbjct 113089 AGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGGACTTCCTGTTGCAAGCGTCC 113148 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883 || || || || ||||| | ||||| ||| |||| | || | ||| || | ||||| | Sbjct 113149 TTGTACAGCATGAACGGGTTGCCAGTCTCAGTCTGCGCCTCGAGAATGGCGTACCAGA-G 113207 Query 71884 ACTCGAGCCTTTATTATATTCTTGTATCTCTT-TTCTCTT--TCGTATTGTGTATATAAT 71940 || | | | | | ||| | | ||| ||||| ||||| | || || | Sbjct 113208 CTTCTGGGCACGA--ACAGTCTCGCGACCCTTGTTCTCGCGCTCGTAACGGGTGTAGAGC 113265 Query 71941 CGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAAT 72000 |||||||| || || | | | | | | ||||| || || || || ||||| | | Sbjct 113266 TCCTCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGT 113325 Query 72001 GACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060 | |||||| || | || | ||||| ||||| |||||||| |||||||| || || Sbjct 113326 GTCCACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTAG 113385 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 || || || | | || ||| || || || ||||| || || ||||| | Sbjct 113386 AAGAGGTCACGAGCTCGTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCCG 113445 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | | ||| | ||||| || || | ||| ||||| | | | || || || ||||| || Sbjct 113446 AATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCA 113505 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 |||||||| | ||| | ||||||||| || || || | | ||| || || | ||||||| Sbjct 113506 CCCTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTG 113565 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATA 72298 |||| || ||||| || || ||| || ||||||| || ||| |||| | Sbjct 113566 GATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTG--A 113623 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATG 72357 | || || || || || | || ||||| || || || ||| || | || || ||||| Sbjct 113624 GTCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACA-CGTCTTCAGTGTGTCGTAGATA 113682 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 72417 || || || || || ||| |||||| | || || ||| ||||| || | Sbjct 113683 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGC 113742 Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATT 72476 |||||||| || || | ||||| || || || || || | |||| |||| |||| | Sbjct 113743 GTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAG-TC 113801 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTG--ATGTATTCCTACCGCGACACGCATT 72534 ||| |||||||| || |||| || | | | ||| || || || ||||||||||| Sbjct 113802 GTAGGTCTCAATGGC--CTTCTCAATGTCTTCGCCATGGATGCCAACGGCGACACGCATG 113859 Query 72535 AACATATGCTGAGG 72548 | ||| ||||| || Sbjct 113860 AGCATGTGCTGTGG 113873 Score = 141 bits (156), Expect = 1e-28 Identities = 352/531 (66%), Gaps = 5/531 (1%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || || || ||||||| || ||||| | ||||| || ||||||||||| || || | | Sbjct 112117 GTGAATTGGATGGGAGCAGAGGCGGCCATGGTACGAAGGTAGTACATGCCGGTCTTCAAA 112176 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 ||||| |||| ||| |||||||| || | || | | || || ||| Sbjct 112177 CCGAGCTTCCAGCCGGCGAAATGCATGGAAGTGATCTTACCCATGGTGGGCTCCTTCATG 112236 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 || || |||| |||||| ||||||||||||||| || | ||| |||||||| | ||| Sbjct 112237 TGGATGTTCAATGACTGAGATTGATCGATGAAGGCACCGCGGTCAGCAGCCATCTGGATG 112296 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 || || || | |||||||| | || || |||| ||| | |||||||| | | Sbjct 112297 ATGGTACGCTGCGAGATTTCCCATACGGTCTTGTAAAGGGTCTTGGTCTCTTCTGGGATG 112356 Query 71041 TTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTC 71097 || | | |||| ||||| |||||||||||||| || | || || || | ||| | Sbjct 112357 TTGGGGATCCTCTGGATGGAACCACCATCTGCAATGATACGGTTCTTCATGTTCTCAGAC 112416 Query 71098 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCA 71157 || | | ||| | | | ||||| ||| || || || || || || ||| Sbjct 112417 CAGAGACCCATGTCGACGAGGTCCTTGAGGAGCCAAGGGTTGACGACCTGGAACTCACCA 112476 Query 71158 GACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCC 71217 | || || | ||| | ||| || || ||| || || || | |||| || ||||| Sbjct 112477 GCCAGCACACGACGTGAGTAGATGTTCGAGGTGTATGGCTCGAAGCACTCGTTGTTTCCA 112536 Query 71218 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCA 71277 | ||| || | ||| || ||||| ||||| || || |||| ||| || | | |||| Sbjct 112537 AGAATCTGCGAAGTCGAGGCAGTAGGCATGGGCGCAACCAGGAGAGAGTTGCGCACACCA 112596 Query 71278 TG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327 || ||| | ||| || || || | || |||| | |||||| || || || Sbjct 112597 TGCTGAGC-GATCTTGTCCTTCAACGAAGCCCAGTCCCAAAGGTCAGAAGG 112646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135248667960