Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 190 3e-43 seq465 129 9e-25 >seq6 Length=114070 Score = 190 bits (210), Expect = 3e-43 Identities = 583/906 (64%), Gaps = 73/906 (8%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| |||||||||| ||||| | || || || ||||| | ||| ||| | ||||||||| Sbjct 14780 TGGCAAATGTACAAGAAGGCCGAAGCTTCTTTCTGGACCGCCGAGGAGATTGATCTGTCC 14839 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||||| || |||| ||| | | || | | || ||||| || || || ||| Sbjct 14840 AAGGATCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCTCCCAC 14899 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200 || | |||||||| |||| ||||||||| ||||||||||| || || || || || || Sbjct 14900 GTTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTCGTCGA-GCGCTT 14958 Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260 ||| ||| | || ||||||| ||||| ||||| ||||| || ||||| || Sbjct 14959 CTCCAGCGAGGTTCAAATACCAGAGGCACGATGCTTCTACGGCTTCCAGATTATGATGGA 15018 Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCA 125317 |||| | ||||| || | ||||| || || |||| ||||| |||| || ||| Sbjct 15019 GAACATCCACTCAGAGACATACTCGCTCCTCATCGACACATACATCAGCGAGCCAAGGCA 15078 Query 125318 ACGTAAACACATGCTCTTTAACGCAAT----------------------CGACACG---- 125351 || | | || ||||| ||||| || | ||||| Sbjct 15079 GCGCACATAC---CTCTTCAACGCCATTGACAACAGTAAGTCACTTCCACCACACGCTTG 15135 Query 125352 ------------------------GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATT 125387 || || | || || || ||||| | |||| | Sbjct 15136 AAGGAACGTGTCTAACGCGTCATAGTTCCATGCATCCGCAAGAAGGCCGACTGGGCTCTC 15195 Query 125388 CGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTA 125447 ||||||| ||| | || || | | ||| || | || || || || || ||||| Sbjct 15196 AAGTGGATCTCAGACAAGAACTCCACTTTTGCCAACCGTCTCGTCGCCTTTGCTGCCGTT 15255 Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 ||||| |||||||| || ||| ||| ||||||| ||||||||||||||||| || Sbjct 15256 GAGGGTATCTTCTTCAGCGGCTCTTTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTG 15315 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 ||||| || || || | |||||| | || || || ||||||||| | ||| ||| Sbjct 15316 ATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGAC 15375 Query 125568 TTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAG 125627 |||| ||| | ||| | | || ||| || | | | | ||||| | || Sbjct 15376 TTTG-CATGC--CTG---CTCTTCTCTCT---TCTCAACACCCGCCCCAGCAAGGATGCC 15426 Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687 |||| ||| | ||||| || || ||| || || ||||| || |||||| | || Sbjct 15427 GTCAAGGCCATCATCACCGAGGCTGTTGAGATTGAGCAGGAGTTCCTCACCGAAGCTCTC 15486 Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747 || | || | |||||||| | || || |||||| ||||||| ||||| || || Sbjct 15487 CCCTGCGCTCTGCTCGGCATGAATTCCACCCTCATGTGCCAGTACATCGAGTTCGTCGCT 15546 Query 125748 GATCGTCTACTGTACGAGTTGATTGG---CCGCAAGATTTACAACGCCAAGAATCCCTTT 125804 || || || |||| | |||| | |||| | |||||||||| || ||||| Sbjct 15547 GACCGCCTGCTGT---TGGCCCTTGGCAACACCAAGGTCTACAACGCCACCAACCCCTTC 15603 Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGC 125864 || |||||| | ||| || || | ||| ||||||||||| ||||||||| ||| || Sbjct 15604 GACTTCATGGAGAACATCTCGCTCGCGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGC 15663 Query 125865 GAGTAC 125870 || ||| Sbjct 15664 GATTAC 15669 >seq465 Length=132516 Score = 129 bits (142), Expect = 9e-25 Identities = 322/484 (67%), Gaps = 4/484 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || || ||||||||||| Sbjct 113510 CAGGGTGGCAACAAGCGCCCTGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCGGAT 113451 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || | ||| | || | ||||| ||| || ||||||| |||||| | ||| Sbjct 113450 GTATTCGGCTTCCTTGACCTACGCAAGAACCACGGTAAGGAAGAGGTACGAGCTCGTGAC 113391 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || |||||| | || ||| | ||||||||||| || | || ||| | Sbjct 113390 CTCTTCTACGCCCTCTGGATTCCCGATCTCTTCATGAAGCGAGTGCAAGAGAACGGCGAG 113331 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || || ||||| |||| || ||||| ||||| Sbjct 113330 TGGACACTCATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACGTCTACGGCGATGAGTTC 113271 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 |||| ||||| ||||||| ||| | | || ||||| ||| ||| | Sbjct 113270 GAGGAGCTCTACACCCGTTACGAGCGCGAGAACAAGGGTCGCGAGACTGTTCG-TGC-CC 113213 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | ||||| | ||| ||| |||||||| | |||| ||| || | Sbjct 113212 AGAAGCTCTGGTACGCCATTCTCGAGGCGCAGACTGAGACTGGCAACCCGTTCATGCTGT 113153 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| | || | || |||||| || | || ||||| |||||| Sbjct 113152 ACAAGGACGCTTGCAACAGGAAGTCCAACCAGAAGAACCTCGGTACCATTCGCAGCTCCA 113093 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | || ||||| || ||||| |||| | | |||| || ||| || || ||| |||| Sbjct 113092 ACCTCTGCACTGAGATTGTCGAGTTCACTGCTCCTGATGAGGTCGCCGTGTGCAACCTGG 113033 Query 97354 CATC 97357 | || Sbjct 113032 CTTC 113029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054837013960