Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq24 183 5e-42 seq179 118 2e-22 >seq24 Length=515444 Score = 183 bits (202), Expect = 5e-42 Identities = 203/268 (76%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 486877 GCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATCCAGGGTATTACCAAGCCCGCTAT 486935 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||||||| |||| | || |||| || |||| Sbjct 486936 CCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCAGCTATGATCTACGAGGAGAC 486995 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | |||| ||||||| || || |||| ||| || || ||| ||||| Sbjct 486996 CCGCGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGTGACGCCGTCACCTACACCGA 487055 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||||| | || ||||||| || | || |||||||| Sbjct 487056 GCACGCCAAGCGCAAGACCGTCACCTCGCTTGACGTCGTCTACGCTCTCAAGCGTCAAGG 487115 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||| || ||||| Sbjct 487116 AAGGACCCTCTACGGTTTCGGTGGTTAA 487143 >seq179 Length=320048 Score = 118 bits (130), Expect = 2e-22 Identities = 89/102 (87%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || |||||||| || ||||||||||| |||| Sbjct 245012 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 244954 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||||| ||||||||||| || ||||||||| |||||| Sbjct 244953 TCCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 244912 Score = 100 bits (110), Expect = 4e-17 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 16528 CTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587 ||| | | || |||| ||||||| |||| ||| | |||| |||||| ||| ||| || Sbjct 244861 CTCCGCAGTGATCTACGAAGAGACCCGTGGTGTCCTCAAGACGTTCCTCGAGAGCGTCAT 244802 Query 16588 CCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATAT 16647 || || || || ||| ||||||||||| || || ||||||||||| || | || | Sbjct 244801 CCGCGACGCCGTCACCTACACCGAGCACGCCAAGCGCAAGACTGTCACTTCTCTCGACGT 244742 Query 16648 CGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 |||||| || | || || || ||||||| | || ||||| || ||||| ||||| Sbjct 244741 CGTCTACGCTCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGTGGTTAAGCTTCT 244684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074769361403