Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq24 183 5e-42
seq179 118 2e-22
>seq24
Length=515444
Score = 183 bits (202), Expect = 5e-42
Identities = 203/268 (76%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| |||||| || |||||||| || || |||||||| |||||
Sbjct 486877 GCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATCCAGGGTATTACCAAGCCCGCTAT 486935
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||||| |||||||||||||| ||||||||| |||| | || |||| || ||||
Sbjct 486936 CCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCAGCTATGATCTACGAGGAGAC 486995
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | |||| | |||| ||||||| || || |||| ||| || || ||| |||||
Sbjct 486996 CCGCGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGTGACGCCGTCACCTACACCGA 487055
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||||| | || ||||||| || | || ||||||||
Sbjct 487056 GCACGCCAAGCGCAAGACCGTCACCTCGCTTGACGTCGTCTACGCTCTCAAGCGTCAAGG 487115
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | | || ||||| || |||||
Sbjct 487116 AAGGACCCTCTACGGTTTCGGTGGTTAA 487143
>seq179
Length=320048
Score = 118 bits (130), Expect = 2e-22
Identities = 89/102 (87%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || |||||||| || ||||||||||| ||||
Sbjct 245012 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 244954
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||||||||| ||||||||||| || ||||||||| ||||||
Sbjct 244953 TCCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 244912
Score = 100 bits (110), Expect = 4e-17
Identities = 129/178 (72%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 16528 CTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587
||| | | || |||| ||||||| |||| ||| | |||| |||||| ||| ||| ||
Sbjct 244861 CTCCGCAGTGATCTACGAAGAGACCCGTGGTGTCCTCAAGACGTTCCTCGAGAGCGTCAT 244802
Query 16588 CCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATAT 16647
|| || || || ||| ||||||||||| || || ||||||||||| || | || |
Sbjct 244801 CCGCGACGCCGTCACCTACACCGAGCACGCCAAGCGCAAGACTGTCACTTCTCTCGACGT 244742
Query 16648 CGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705
|||||| || | || || || ||||||| | || ||||| || ||||| |||||
Sbjct 244741 CGTCTACGCTCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGTGGTTAAGCTTCT 244684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074769361403
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |