Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq465 161 1e-34
seq6 100 4e-16
>seq465
Length=132516
Score = 161 bits (178), Expect = 1e-34
Identities = 611/943 (65%), Gaps = 32/943 (3%)
Strand=Plus/Plus
Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197
|||||||| || || | || | | | | ||||| || || | || ||||| | | |
Sbjct 113269 TCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGTGTC 113328
Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257
||||| |||| || | |||||| ||||| |||||||| |||||||| || || ||
Sbjct 113329 CACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTAGAAG 113388
Query 63258 AGATCTCTGGTTCTATGTTCCTCGT--TTCCTGTA-TTCTTTTTAAGATCGAGGAACGCC 63314
|| || | | || || |||| | || | || ||||| || || ||||| |
Sbjct 113389 AGGTCACGAGCTC---GTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCCG 113445
Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374
| | ||| | ||||| || || | ||| ||||| | | | ||||| || ||||| ||
Sbjct 113446 AATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCA 113505
Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434
|||||||| | ||| | ||||||||| || || || | | ||| || || | ||| ||
Sbjct 113506 CCCTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTG 113565
Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATA 63492
||| | || ||||| || || ||| || ||||||| || | | |||||
Sbjct 113566 GATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTGA-- 113623
Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTGTCATAGATA 63551
| || || || || || | || ||||| || || || ||| || | ||||| ||||||
Sbjct 113624 GTCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACA-CGTCTTCAGTGTGTCGTAGATA 113682
Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63611
|| || ||||| || || |||||| | || || ||| ||||| || |
Sbjct 113683 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGC 113742
Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATT 63670
|||||||| || || | ||||| || || || || || | |||| || | |||| |
Sbjct 113743 GTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAG-TC 113801
Query 63671 GTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCA 63726
||| |||||||| || || || || |||| |||| || || ||||||||||
Sbjct 113802 GTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATG----CCAACGGCGACACGCA 113857
Query 63727 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63786
| | ||||||||| || | || | | |||| ||| || | | ||| || |
Sbjct 113858 TGAGCATGTGCTGTGGGCGCTCTGCAACCTTGCCGTTGATGCGGAGGAGGTATGAGCGCT 113917
Query 63787 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63846
| | || || || ||||| | | ||| ||||| || || || | ||| ||||||
Sbjct 113918 CTAGCGTCTTGAAGCCAAAGAACTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGAGT 113977
Query 63847 TGAG---TTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGA 63902
|||| || | | | || || | | | | | ||| || | ||| || || ||
Sbjct 113978 TGAGCTCTTCAGCGTGATCTTGGATGATCTTGTAGATG----TAGTCTGAGATCATGGGC 114033
Query 63903 GAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAAT 63962
| || || || || || || ||||| || | | ||| | || || ||
Sbjct 114034 TGACTCTTGCCGTTCTTGGGGTTGACATATGTGTACAGATCTGAGACAACAGCAGAGAAC 114093
Query 63963 AGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAA 64022
| || || || | |||||| || || |||||||| || | || || || ||||||||
Sbjct 114094 TGCTTCTTGGTCTGCTTGTGGAGGTTGGATACGGCGATACGCGCCGCGAGGATGGCATAG 114153
Query 64023 TCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64064
|| |||||| ||||| || || || ||| | ||||| |||
Sbjct 114154 TCGGGATGTGTGGTAGT-CATGTATGCCGCTGTCTCGGCCGCC 114195
Score = 120 bits (132), Expect = 4e-22
Identities = 303/460 (66%), Gaps = 3/460 (1%)
Strand=Plus/Plus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
|||||||| |||||||| || |||| | ||||| || |||||||| || || || | |
Sbjct 112117 GTGAATTGGATGGGAGCAGAGGCGGCCATGGTACGAAGGTAGTACATGCCGGTCTTCAAA 112176
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114
||||| |||| ||| |||||||| || | || | || || ||
Sbjct 112177 CCGAGCTTCCAGCCGGCGAAATGCATGGAAGTGATCTTACCCATGGTGGGCTCCTTCATG 112236
Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174
||||| |||| || ||| ||||||||||||||| || | ||| |||||||| | |||
Sbjct 112237 TGGATGTTCAATGACTGAGATTGATCGATGAAGGCACCGCGGTCAGCAGCCATCTGGATG 112296
Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234
|| || || | |||||||| | || || |||| ||| | |||||||| | |
Sbjct 112297 ATGGTACGCTGCGAGATTTCCCATACGGTCTTGTAAAGGGTCTTGGTCTCTTCTGGGATG 112356
Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291
|| | | |||| ||||| ||||||||||| || || | ||||| || | ||| |
Sbjct 112357 TTGGGGATCCTCTGGATGGAACCACCATCTGCAATGATACGGTTCTTCATGTTCTCAGAC 112416
Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351
|| | | ||| | | | ||||| || || || || || || || |||
Sbjct 112417 CAGAGACCCATGTCGACGAGGTCCTTGAGGAGCCAAGGGTTGACGACCTGGAACTCACCA 112476
Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411
| || || | || | ||| || || ||| || || || | |||| || |||||
Sbjct 112477 GCCAGCACACGACGTGAGTAGATGTTCGAGGTGTATGGCTCGAAGCACTCGTTGTTTCCA 112536
Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62451
| ||| || | ||| || ||||| ||||| || || ||||
Sbjct 112537 AGAATCTGCGAAGTCGAGGCAGTAGGCATGGGCGCAACCA 112576
>seq6
Length=114070
Score = 100 bits (110), Expect = 4e-16
Identities = 148/209 (71%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
||||| || ||| ||||| |||||||| | || || |||||||| || || ||
Sbjct 15383 CATGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGA 15324
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|| ||||| || || ||||| || ||||| || ||||| ||||| || || ||||||
Sbjct 15323 CCTGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAAGAGCCGCTGAAGAAG 15264
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGT 33480
|| || || || ||||||||||| | || | | || || || | ||||
Sbjct 15263 ATACCCTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAAAGTGGAGTTCTTGTCTGAG 15204
Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33509
|||||||| ||||||| |||||||||||
Sbjct 15203 ATCCACTTGAGAGCCCAGTCGGCCTTCTT 15175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622943532398360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |