Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq465 161 1e-34 seq6 100 4e-16 >seq465 Length=132516 Score = 161 bits (178), Expect = 1e-34 Identities = 611/943 (65%), Gaps = 32/943 (3%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 |||||||| || || | || | | | | ||||| || || | || ||||| | | | Sbjct 113269 TCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGTGTC 113328 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 ||||| |||| || | |||||| ||||| |||||||| |||||||| || || || Sbjct 113329 CACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTAGAAG 113388 Query 63258 AGATCTCTGGTTCTATGTTCCTCGT--TTCCTGTA-TTCTTTTTAAGATCGAGGAACGCC 63314 || || | | || || |||| | || | || ||||| || || ||||| | Sbjct 113389 AGGTCACGAGCTC---GTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCCG 113445 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | | ||| | ||||| || || | ||| ||||| | | | ||||| || ||||| || Sbjct 113446 AATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCA 113505 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 |||||||| | ||| | ||||||||| || || || | | ||| || || | ||| || Sbjct 113506 CCCTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTG 113565 Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATA 63492 ||| | || ||||| || || ||| || ||||||| || | | ||||| Sbjct 113566 GATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTGA-- 113623 Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTGTCATAGATA 63551 | || || || || || | || ||||| || || || ||| || | ||||| |||||| Sbjct 113624 GTCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACA-CGTCTTCAGTGTGTCGTAGATA 113682 Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63611 || || ||||| || || |||||| | || || ||| ||||| || | Sbjct 113683 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGC 113742 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATT 63670 |||||||| || || | ||||| || || || || || | |||| || | |||| | Sbjct 113743 GTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAG-TC 113801 Query 63671 GTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCA 63726 ||| |||||||| || || || || |||| |||| || || |||||||||| Sbjct 113802 GTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATG----CCAACGGCGACACGCA 113857 Query 63727 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63786 | | ||||||||| || | || | | |||| ||| || | | ||| || | Sbjct 113858 TGAGCATGTGCTGTGGGCGCTCTGCAACCTTGCCGTTGATGCGGAGGAGGTATGAGCGCT 113917 Query 63787 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63846 | | || || || ||||| | | ||| ||||| || || || | ||| |||||| Sbjct 113918 CTAGCGTCTTGAAGCCAAAGAACTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGAGT 113977 Query 63847 TGAG---TTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGA 63902 |||| || | | | || || | | | | | ||| || | ||| || || || Sbjct 113978 TGAGCTCTTCAGCGTGATCTTGGATGATCTTGTAGATG----TAGTCTGAGATCATGGGC 114033 Query 63903 GAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAAT 63962 | || || || || || || ||||| || | | ||| | || || || Sbjct 114034 TGACTCTTGCCGTTCTTGGGGTTGACATATGTGTACAGATCTGAGACAACAGCAGAGAAC 114093 Query 63963 AGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAA 64022 | || || || | |||||| || || |||||||| || | || || || |||||||| Sbjct 114094 TGCTTCTTGGTCTGCTTGTGGAGGTTGGATACGGCGATACGCGCCGCGAGGATGGCATAG 114153 Query 64023 TCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64064 || |||||| ||||| || || || ||| | ||||| ||| Sbjct 114154 TCGGGATGTGTGGTAGT-CATGTATGCCGCTGTCTCGGCCGCC 114195 Score = 120 bits (132), Expect = 4e-22 Identities = 303/460 (66%), Gaps = 3/460 (1%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||| |||||||| || |||| | ||||| || |||||||| || || || | | Sbjct 112117 GTGAATTGGATGGGAGCAGAGGCGGCCATGGTACGAAGGTAGTACATGCCGGTCTTCAAA 112176 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 ||||| |||| ||| |||||||| || | || | || || || Sbjct 112177 CCGAGCTTCCAGCCGGCGAAATGCATGGAAGTGATCTTACCCATGGTGGGCTCCTTCATG 112236 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 ||||| |||| || ||| ||||||||||||||| || | ||| |||||||| | ||| Sbjct 112237 TGGATGTTCAATGACTGAGATTGATCGATGAAGGCACCGCGGTCAGCAGCCATCTGGATG 112296 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || || | |||||||| | || || |||| ||| | |||||||| | | Sbjct 112297 ATGGTACGCTGCGAGATTTCCCATACGGTCTTGTAAAGGGTCTTGGTCTCTTCTGGGATG 112356 Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | | |||| ||||| ||||||||||| || || | ||||| || | ||| | Sbjct 112357 TTGGGGATCCTCTGGATGGAACCACCATCTGCAATGATACGGTTCTTCATGTTCTCAGAC 112416 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 || | | ||| | | | ||||| || || || || || || || ||| Sbjct 112417 CAGAGACCCATGTCGACGAGGTCCTTGAGGAGCCAAGGGTTGACGACCTGGAACTCACCA 112476 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | || || | || | ||| || || ||| || || || | |||| || ||||| Sbjct 112477 GCCAGCACACGACGTGAGTAGATGTTCGAGGTGTATGGCTCGAAGCACTCGTTGTTTCCA 112536 Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62451 | ||| || | ||| || ||||| ||||| || || |||| Sbjct 112537 AGAATCTGCGAAGTCGAGGCAGTAGGCATGGGCGCAACCA 112576 >seq6 Length=114070 Score = 100 bits (110), Expect = 4e-16 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 ||||| || ||| ||||| |||||||| | || || |||||||| || || || Sbjct 15383 CATGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGA 15324 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || ||||| || ||||| || ||||| ||||| || || |||||| Sbjct 15323 CCTGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAAGAGCCGCTGAAGAAG 15264 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGT 33480 || || || || ||||||||||| | || | | || || || | |||| Sbjct 15263 ATACCCTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAAAGTGGAGTTCTTGTCTGAG 15204 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 |||||||| ||||||| ||||||||||| Sbjct 15203 ATCCACTTGAGAGCCCAGTCGGCCTTCTT 15175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943532398360