Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq465 405 1e-107
seq322 89.7 1e-12
>seq465
Length=132516
Score = 405 bits (448), Expect = 1e-107
Identities = 1172/1781 (66%), Gaps = 42/1781 (2%)
Strand=Plus/Minus
Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459
|||||| | ||| || ||||| || ||||| || | ||| || ||||| |||
Sbjct 113927 AAGACGCTAGAGCGCTCATACCTCCTCCGCATCAACGGCAAGGTTGCAGAGCGCCCACAG 113868
Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA 363519
|| ||| | |||||||| || |||| |||||| || || |||| || |||||
Sbjct 113867 CACATGCTCATGCGTGTCGCCGTTGGCATCCATGGCGAAGACATTGAGAAGGCCATTGAG 113808
Query 363520 ACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAATGTACAATG 363577
|| || | || | | || || ||| ||||| || ||| |||| || ||| ||| |
Sbjct 113807 ACCTACGA-CTAC-ATGTCGCAAAAGTACTTCACACATGCCTCGCCTACGCTGTTCAACG 113750
Query 363578 CTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCA 363637
| ||||| | || || |||||||| || ||||| || | | |||||||| || ||
Sbjct 113749 CGGGAACGCCCAACCCTCAGATGTCATCCTGCTTCCTCATCGACATGAAGGAGGACAGCA 113690
Query 363638 TCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAA 363697
|||| ||||||| |||||||| |||| ||||| | || ||||||| || ||||| |
Sbjct 113689 TCGACGGTATCTACGACACACTGAAGACGTGTGCGTTGATCTCCAAGACCGCTGGCGGCA 113630
Query 363698 TTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGGGGA 363756
|||| | | ||| | ||||| || | | |||||| | ||||| |||
Sbjct 113629 TTGGACTCAATGTGCACCGCATCCGTGCCACCGG-CTCCTACATTGGTGGCACCAACGGA 113571
Query 363757 TACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGAC 363816
|| ||||| || | || ||||| ||||| | |||| || || | ||||||||
Sbjct 113570 ACATCCAATGGTCTCATCCCGATGCTCCGTGTCTACAACAACACCGCTCGCTACGTCGAT 113511
Query 363817 CAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGAT 363876
|||||||| |||||| || || || || || || |||||||| || || |||
Sbjct 113510 CAGGGTGGCAACAAGCGCCCTGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCGGAT 113451
Query 363877 ATTTTTGAGTTTCTTGAGCTCCGGAAAAAC-ACGGGAA--AAGAGGAATTGCGTGCACGT 363933
| || | || ||||| || || || ||| |||| || |||||| | || || |||
Sbjct 113450 GTATTCGGCTTCCTTGACCTACGCAAGAACCACGGTAAGGAAGAGGTA---CGAGCTCGT 113394
Query 363934 GATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG---GAGGCAGGT 363990
|| || ||||| || || ||| || | || | || |||||||| ||| ||| ||
Sbjct 113393 GACCTCTTCTACGCCCTCTGGATTCCCGATCTCTTCATGAAGCGAGTGCAAGAGAACGGC 113334
Query 363991 AAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGAC 364050
|| ||| ||||| | ||||| |||| || || |||||| |||| || | || ||
Sbjct 113333 GAG---TGGACACTCATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACGTCTACGGCGAT 113277
Query 364051 GACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCC 364110
|| | | | || ||| || || ||| |||| ||| |||| |||
Sbjct 113276 GAGTTCGAGGAGCTCTACACCCGTTACGAGCGCGAGAACAAGGGTCGCGAGACTGTTCGT 113217
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| |||||||| |||| ||||| | || |||||| |||||| || | || | |||
Sbjct 113216 GCCCAGAAGCTCTGGTACGCCATTCTCGAGGCGCAGACTGAGACTGGCAACCCGTTCATG 113157
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
||||||| || | |||||| | |||||||||||| || |||| ||||| |||| ||||
Sbjct 113156 CTGTACAAGGACGCTTGCAACAGGAAGTCCAACCAGAAGAACCTCGGTACCATTC-GCAG 113098
Query 364231 AGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289
| ||||| || || |||||| | || | ||| ||||| || ||| ||||| || ||
Sbjct 113097 CTCCAACCTCTGCACTGAGATTGTCGAGTTCACTGCTCCTGATGAGGTCGCCGTGTGCAA 113038
Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGT-----AAAAGA-TGGTACTTTTGACCACCA 364343
||| || || |||| ||||| | ||||| | ||| ||| || ||| |||
Sbjct 113037 CCTGGCTTCCCTCGCCCTTCCATCCTTTGTCGACTACAAGCGTGGCGAGTTCGACTTCCA 112978
Query 364344 GCATCTTTATGACGTAACCTATCATGCT-ACTTGCAATCTCGACAAGGTTATCGACAAGA 364402
| || | || || ||| || | | || | || ||| ||||| | ||||| |
Sbjct 112977 CAAGCTCCACGAGGTGACC-ATGGTCGTCACACGTAACCTCAACAAGATCATCGAGGTCA 112919
Query 364403 ATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTG 364462
| | || || | || || || ||| | || ||| | || || |||||||
Sbjct 112918 ACCACTACCCTGTGGAGGAGGCACGCCGCAGCAATTTCCGCCATAGGCCCATCGGTCTTG 112859
Query 364463 GTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACG 364522
|||| ||||| || ||||| | ||| | || || | ||||| ||| |||| |
Sbjct 112858 GTGTTCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCGTCTGCCTTTTGAGTCGACTGAAG 112799
Query 364523 CTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGT 364582
| || || | ||||||| || ||||| || || || | || | || |
Sbjct 112798 CCAAGAAGCTCAACACCCAGATCTTCGAGACAATTTACCACGCGGCTCTCACGTCGTCCT 112739
Query 364583 GTGATTTGGCAAAA-ACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAG 364641
| ||| | || || | | || | || |||| || ||||| || ||| | || ||
Sbjct 112738 GCGATATCGCCAAGGAGCTTGGTCCA-TATGCTACATACGAGGGTTCGCCTGTGTCCAAG 112680
Query 364642 GGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACG 364701
|| | | |||| ||||| ||| || || || |||| || ||| ||||||
Sbjct 112679 GGTCAGCTTCAGTACGATCTCTGGGGCGTGACTCCTTCTGACCTTTGGGACTGGG----- 112625
Query 364702 CTACGTTCCAACGTTAAGA------AGCATGGTACTCGCAACTCCCTCGTTACAGCGCCC 364755
|| |||| || | |||| |||||||| |||||||| ||| | ||||||
Sbjct 112624 CTTCGTTG-AAGGACAAGATCGCTCAGCATGGTGTGCGCAACTCTCTCCTGGTTGCGCCC 112566
Query 364756 ATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACA 364815
||||| || || || ||| | ||||| || |||||||||||||||||||| || | ||
Sbjct 112565 ATGCCTACTGCCTCGACTTCGCAGATTCTTGGAAACAACGAGTGCTTCGAGCCATACACC 112506
Query 364816 AGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTA 364875
|| | || ||||| || || || | || || || | ||| || || | ||
Sbjct 112505 TCGAACATCTACTCACGTCGTGTGCTGGCTGGTGAGTTCCAGGTCGTCAACCCTTGGCTC 112446
Query 364876 GTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCC 364935
||||||| || |||| || || ||| ||| | |||||||||| |||||| ||
Sbjct 112445 CTCAAGGACCTCGTCGACATGGGTCTCTGGTCTGAGAACATGAAGAACCGTATCATTGCA 112386
Query 364936 GCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAA 364995
| | |||||| | |||| || || | |||||||| ||| | |||||||
Sbjct 112385 GATGGTGGTTCCATCCAGAGGATCCCCAACATCCCAGAAGAGACCAAGACCCTTTACAAG 112326
Query 364996 ACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTT 365055
|||||||||||||| || ||| || |||| | ||||| || || |||||||| ||
Sbjct 112325 ACCGTATGGGAAATCTCGCAGCGTACCATCATCCAGATGGCTGCTGACCGCGGTGCCTTC 112266
Query 365056 ATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACA 365115
||| ||| ||||| || ||| | ||||| |||| ||| | ||| | ||
Sbjct 112265 ATCGATCAATCTCAGTCATTGAACATCCACATGAAGGAGCCCACCATGGGTAAGATCACT 112206
Query 365116 TCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
|||||||||||| ||| ||||| |||| | ||||| ||
Sbjct 112205 TCCATGCATTTCGCCGGCTGGAAGCTCGGTTTGAAGACCGG 112165
>seq322
Length=270006
Score = 89.7 bits (98), Expect = 1e-12
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 65863 CCTTGTGCGTTACGAATCGTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACA 65922
||| | | ||| || | || |||||||| || ||| ||||| ||||||||
Sbjct 74555 CCTAGCGAGTTTCGGACAGTGCCGTCATATTTTACCATGACGTCTTCGAGAGCCTTTACG 74614
Query 65923 AGACAACGCTGGATGTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCA 65982
|||| |||||| ||||||||| | | ||||| || || |||||||| | ||||||||||
Sbjct 74615 AGACGACGCTGAATGTAACCAGTTTCAGCAGTCTTGACAGCGGTATCGATGAGACCTTCA 74674
Query 65983 CGCCCGGACATTGCAGAAAAGAAAAACTC 66011
|| || | ||| || |||||| |||||
Sbjct 74675 CGACCAGCCATGGCGTGAAAGAAGAACTC 74703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303345734668322
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |