Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq465 405 1e-107 seq322 89.7 1e-12 >seq465 Length=132516 Score = 405 bits (448), Expect = 1e-107 Identities = 1172/1781 (66%), Gaps = 42/1781 (2%) Strand=Plus/Minus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459 |||||| | ||| || ||||| || ||||| || | ||| || ||||| ||| Sbjct 113927 AAGACGCTAGAGCGCTCATACCTCCTCCGCATCAACGGCAAGGTTGCAGAGCGCCCACAG 113868 Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA 363519 || ||| | |||||||| || |||| |||||| || || |||| || ||||| Sbjct 113867 CACATGCTCATGCGTGTCGCCGTTGGCATCCATGGCGAAGACATTGAGAAGGCCATTGAG 113808 Query 363520 ACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAATGTACAATG 363577 || || | || | | || || ||| ||||| || ||| |||| || ||| ||| | Sbjct 113807 ACCTACGA-CTAC-ATGTCGCAAAAGTACTTCACACATGCCTCGCCTACGCTGTTCAACG 113750 Query 363578 CTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCA 363637 | ||||| | || || |||||||| || ||||| || | | |||||||| || || Sbjct 113749 CGGGAACGCCCAACCCTCAGATGTCATCCTGCTTCCTCATCGACATGAAGGAGGACAGCA 113690 Query 363638 TCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAA 363697 |||| ||||||| |||||||| |||| ||||| | || ||||||| || ||||| | Sbjct 113689 TCGACGGTATCTACGACACACTGAAGACGTGTGCGTTGATCTCCAAGACCGCTGGCGGCA 113630 Query 363698 TTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGGGGA 363756 |||| | | ||| | ||||| || | | |||||| | ||||| ||| Sbjct 113629 TTGGACTCAATGTGCACCGCATCCGTGCCACCGG-CTCCTACATTGGTGGCACCAACGGA 113571 Query 363757 TACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGAC 363816 || ||||| || | || ||||| ||||| | |||| || || | |||||||| Sbjct 113570 ACATCCAATGGTCTCATCCCGATGCTCCGTGTCTACAACAACACCGCTCGCTACGTCGAT 113511 Query 363817 CAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGAT 363876 |||||||| |||||| || || || || || || |||||||| || || ||| Sbjct 113510 CAGGGTGGCAACAAGCGCCCTGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCGGAT 113451 Query 363877 ATTTTTGAGTTTCTTGAGCTCCGGAAAAAC-ACGGGAA--AAGAGGAATTGCGTGCACGT 363933 | || | || ||||| || || || ||| |||| || |||||| | || || ||| Sbjct 113450 GTATTCGGCTTCCTTGACCTACGCAAGAACCACGGTAAGGAAGAGGTA---CGAGCTCGT 113394 Query 363934 GATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG---GAGGCAGGT 363990 || || ||||| || || ||| || | || | || |||||||| ||| ||| || Sbjct 113393 GACCTCTTCTACGCCCTCTGGATTCCCGATCTCTTCATGAAGCGAGTGCAAGAGAACGGC 113334 Query 363991 AAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGAC 364050 || ||| ||||| | ||||| |||| || || |||||| |||| || | || || Sbjct 113333 GAG---TGGACACTCATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACGTCTACGGCGAT 113277 Query 364051 GACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCC 364110 || | | | || ||| || || ||| |||| ||| |||| ||| Sbjct 113276 GAGTTCGAGGAGCTCTACACCCGTTACGAGCGCGAGAACAAGGGTCGCGAGACTGTTCGT 113217 Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || |||||||| |||| ||||| | || |||||| |||||| || | || | ||| Sbjct 113216 GCCCAGAAGCTCTGGTACGCCATTCTCGAGGCGCAGACTGAGACTGGCAACCCGTTCATG 113157 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 ||||||| || | |||||| | |||||||||||| || |||| ||||| |||| |||| Sbjct 113156 CTGTACAAGGACGCTTGCAACAGGAAGTCCAACCAGAAGAACCTCGGTACCATTC-GCAG 113098 Query 364231 AGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 | ||||| || || |||||| | || | ||| ||||| || ||| ||||| || || Sbjct 113097 CTCCAACCTCTGCACTGAGATTGTCGAGTTCACTGCTCCTGATGAGGTCGCCGTGTGCAA 113038 Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGT-----AAAAGA-TGGTACTTTTGACCACCA 364343 ||| || || |||| ||||| | ||||| | ||| ||| || ||| ||| Sbjct 113037 CCTGGCTTCCCTCGCCCTTCCATCCTTTGTCGACTACAAGCGTGGCGAGTTCGACTTCCA 112978 Query 364344 GCATCTTTATGACGTAACCTATCATGCT-ACTTGCAATCTCGACAAGGTTATCGACAAGA 364402 | || | || || ||| || | | || | || ||| ||||| | ||||| | Sbjct 112977 CAAGCTCCACGAGGTGACC-ATGGTCGTCACACGTAACCTCAACAAGATCATCGAGGTCA 112919 Query 364403 ATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTG 364462 | | || || | || || || ||| | || ||| | || || ||||||| Sbjct 112918 ACCACTACCCTGTGGAGGAGGCACGCCGCAGCAATTTCCGCCATAGGCCCATCGGTCTTG 112859 Query 364463 GTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACG 364522 |||| ||||| || ||||| | ||| | || || | ||||| ||| |||| | Sbjct 112858 GTGTTCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCGTCTGCCTTTTGAGTCGACTGAAG 112799 Query 364523 CTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGT 364582 | || || | ||||||| || ||||| || || || | || | || | Sbjct 112798 CCAAGAAGCTCAACACCCAGATCTTCGAGACAATTTACCACGCGGCTCTCACGTCGTCCT 112739 Query 364583 GTGATTTGGCAAAA-ACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAG 364641 | ||| | || || | | || | || |||| || ||||| || ||| | || || Sbjct 112738 GCGATATCGCCAAGGAGCTTGGTCCA-TATGCTACATACGAGGGTTCGCCTGTGTCCAAG 112680 Query 364642 GGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACG 364701 || | | |||| ||||| ||| || || || |||| || ||| |||||| Sbjct 112679 GGTCAGCTTCAGTACGATCTCTGGGGCGTGACTCCTTCTGACCTTTGGGACTGGG----- 112625 Query 364702 CTACGTTCCAACGTTAAGA------AGCATGGTACTCGCAACTCCCTCGTTACAGCGCCC 364755 || |||| || | |||| |||||||| |||||||| ||| | |||||| Sbjct 112624 CTTCGTTG-AAGGACAAGATCGCTCAGCATGGTGTGCGCAACTCTCTCCTGGTTGCGCCC 112566 Query 364756 ATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACA 364815 ||||| || || || ||| | ||||| || |||||||||||||||||||| || | || Sbjct 112565 ATGCCTACTGCCTCGACTTCGCAGATTCTTGGAAACAACGAGTGCTTCGAGCCATACACC 112506 Query 364816 AGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTA 364875 || | || ||||| || || || | || || || | ||| || || | || Sbjct 112505 TCGAACATCTACTCACGTCGTGTGCTGGCTGGTGAGTTCCAGGTCGTCAACCCTTGGCTC 112446 Query 364876 GTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCC 364935 ||||||| || |||| || || ||| ||| | |||||||||| |||||| || Sbjct 112445 CTCAAGGACCTCGTCGACATGGGTCTCTGGTCTGAGAACATGAAGAACCGTATCATTGCA 112386 Query 364936 GCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAA 364995 | | |||||| | |||| || || | |||||||| ||| | ||||||| Sbjct 112385 GATGGTGGTTCCATCCAGAGGATCCCCAACATCCCAGAAGAGACCAAGACCCTTTACAAG 112326 Query 364996 ACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTT 365055 |||||||||||||| || ||| || |||| | ||||| || || |||||||| || Sbjct 112325 ACCGTATGGGAAATCTCGCAGCGTACCATCATCCAGATGGCTGCTGACCGCGGTGCCTTC 112266 Query 365056 ATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACA 365115 ||| ||| ||||| || ||| | ||||| |||| ||| | ||| | || Sbjct 112265 ATCGATCAATCTCAGTCATTGAACATCCACATGAAGGAGCCCACCATGGGTAAGATCACT 112206 Query 365116 TCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||||||||||| ||| ||||| |||| | ||||| || Sbjct 112205 TCCATGCATTTCGCCGGCTGGAAGCTCGGTTTGAAGACCGG 112165 >seq322 Length=270006 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 65863 CCTTGTGCGTTACGAATCGTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACA 65922 ||| | | ||| || | || |||||||| || ||| ||||| |||||||| Sbjct 74555 CCTAGCGAGTTTCGGACAGTGCCGTCATATTTTACCATGACGTCTTCGAGAGCCTTTACG 74614 Query 65923 AGACAACGCTGGATGTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCA 65982 |||| |||||| ||||||||| | | ||||| || || |||||||| | |||||||||| Sbjct 74615 AGACGACGCTGAATGTAACCAGTTTCAGCAGTCTTGACAGCGGTATCGATGAGACCTTCA 74674 Query 65983 CGCCCGGACATTGCAGAAAAGAAAAACTC 66011 || || | ||| || |||||| ||||| Sbjct 74675 CGACCAGCCATGGCGTGAAAGAAGAACTC 74703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303345734668322