Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq169 140 2e-28
seq428 118 7e-22
>seq169
Length=8550
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 6883 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6824
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 6823 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6789
>seq428
Length=640874
Score = 118 bits (130), Expect = 7e-22
Identities = 224/330 (68%), Gaps = 0/330 (0%)
Strand=Plus/Plus
Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217
||| |||| ||| | ||| | ||| |||| || ||| | |||||||||||||| ||
Sbjct 453430 CACCATGGCTACCATCAACATTCGTCGCGATGTCGCCGACTCCTTCTACCGCTACAAGAT 453489
Query 6218 GCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAA 6277
| ||||||| ||||| | || || || || ||||| || || |||||||| |||||
Sbjct 453490 GGAGCGCATCCAGTCCAAGATTGAAGGCAAAGGCAACGGCATCAAGACCGTCATCGTCAA 453549
Query 6278 CATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337
| || ||||| || |||| | |||||| || | || | || || |||||
Sbjct 453550 CCTGAGCAGCGTCGCCAACTCGCTTGCCCGCCCTCCCGCTCACGTCATCAAGTACTTCGG 453609
Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGG 6397
| || || || || ||||| | | | ||| |||| |||| ||| | |||||
Sbjct 453610 CTTTGAGCTCGGAGCCCAGACCAACACCAACCCCAATGACGACCGCTGGATCATCAACGG 453669
Query 6398 ATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCT 6457
| || | || |||||| ||||||| || |||||||| || ||||||||| ||
Sbjct 453670 CGCCCACGATGCTAGCAAGCTCCAGGACTACCTCGACGGCTTCATCACCAAGTTTGTTCT 453729
Query 6458 GTGTCGGGAATGCGATAACCCGGAGACCGA 6487
|| | | ||| | ||||| ||||||||
Sbjct 453730 TTGCAAGAAGTGCAAGAACCCCGAGACCGA 453759
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334945277298401
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |