Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq169 140 2e-28 seq428 118 7e-22 >seq169 Length=8550 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6883 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6824 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6823 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6789 >seq428 Length=640874 Score = 118 bits (130), Expect = 7e-22 Identities = 224/330 (68%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217 ||| |||| ||| | ||| | ||| |||| || ||| | |||||||||||||| || Sbjct 453430 CACCATGGCTACCATCAACATTCGTCGCGATGTCGCCGACTCCTTCTACCGCTACAAGAT 453489 Query 6218 GCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAA 6277 | ||||||| ||||| | || || || || ||||| || || |||||||| ||||| Sbjct 453490 GGAGCGCATCCAGTCCAAGATTGAAGGCAAAGGCAACGGCATCAAGACCGTCATCGTCAA 453549 Query 6278 CATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337 | || ||||| || |||| | |||||| || | || | || || ||||| Sbjct 453550 CCTGAGCAGCGTCGCCAACTCGCTTGCCCGCCCTCCCGCTCACGTCATCAAGTACTTCGG 453609 Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGG 6397 | || || || || ||||| | | | ||| |||| |||| ||| | ||||| Sbjct 453610 CTTTGAGCTCGGAGCCCAGACCAACACCAACCCCAATGACGACCGCTGGATCATCAACGG 453669 Query 6398 ATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCT 6457 | || | || |||||| ||||||| || |||||||| || ||||||||| || Sbjct 453670 CGCCCACGATGCTAGCAAGCTCCAGGACTACCTCGACGGCTTCATCACCAAGTTTGTTCT 453729 Query 6458 GTGTCGGGAATGCGATAACCCGGAGACCGA 6487 || | | ||| | ||||| |||||||| Sbjct 453730 TTGCAAGAAGTGCAAGAACCCCGAGACCGA 453759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945277298401