Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq465 167 3e-36
seq6 82.4 1e-10
>seq465
Length=132516
Score = 167 bits (184), Expect = 3e-36
Identities = 478/724 (66%), Gaps = 22/724 (3%)
Strand=Plus/Plus
Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052
|||||||| || || | || | | | || ||||| || || | || ||||| | | |
Sbjct 113269 TCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGTGTC 113328
Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112
||||| |||| || | |||||| ||||| |||||||| |||||||| || || ||
Sbjct 113329 CACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTAGAAG 113388
Query 63113 AGATCTCTGGTTCTATGTTCCTCGT--TTCCTGTA-TTCTTTTTAAGATCGAGGAACGCC 63169
|| || | | || || |||| | || | || ||||| || || ||||| |
Sbjct 113389 AGGTCACGAGCTC---GTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCCG 113445
Query 63170 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63229
| | ||| | ||||| || || | ||| ||||| | | | ||||| || ||||| ||
Sbjct 113446 AATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCA 113505
Query 63230 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 63289
|||||||| | ||| | ||||||||| || || || | | ||| || || | |||||||
Sbjct 113506 CCCTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTG 113565
Query 63290 GATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATA 63347
||||| || ||||| || || ||| || ||||||| || | | |||| |
Sbjct 113566 GATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTG--A 113623
Query 63348 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATG 63406
| || || || || || | || ||||| || || || ||| || | || || |||||
Sbjct 113624 GTCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACA-CGTCTTCAGTGTGTCGTAGATA 113682
Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63466
|| || || || || ||| |||||| | || || ||| ||||| || |
Sbjct 113683 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGC 113742
Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATT 63525
|||||||| || || | ||||| || || || || || | |||| || | |||| |
Sbjct 113743 GTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAG-TC 113801
Query 63526 GTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCA 63581
||| |||||||| || || || || |||| |||| || || ||||||||||
Sbjct 113802 GTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATG----CCAACGGCGACACGCA 113857
Query 63582 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63641
| | ||||||||| || | || | | |||| ||| || | | ||| || |
Sbjct 113858 TGAGCATGTGCTGTGGGCGCTCTGCAACCTTGCCGTTGATGCGGAGGAGGTATGAGCGCT 113917
Query 63642 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701
| | || || || ||||| | | ||| ||||| || || || | ||| ||||||
Sbjct 113918 CTAGCGTCTTGAAGCCAAAGAACTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGAGT 113977
Query 63702 TGAG 63705
||||
Sbjct 113978 TGAG 113981
>seq6
Length=114070
Score = 82.4 bits (90), Expect = 1e-10
Identities = 144/209 (69%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
||||| || ||| ||| | |||||||| | || | |||||||| || || ||
Sbjct 15383 CATGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGA 15324
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780
|| ||||| || || ||||| || ||||| || |||||||| || || || |||||
Sbjct 15323 CCTGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAAGAGCCGCTGAAGAAG 15264
Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT--- 32837
|| || || || || |||||||| | || | | || || || | | | | |
Sbjct 15263 ATACCCTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAAAGTGGAGTTCTTGTCTGAG 15204
Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTT 32866
|||||||| ||||||| |||||||||||
Sbjct 15203 ATCCACTTGAGAGCCCAGTCGGCCTTCTT 15175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633628269491600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |