Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 2e-15 seq53 86.0 1e-11 >seq6 Length=114070 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 15650 TCGAAGAAGTTGGTCTTGCCCGCGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 15591 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| | |||||| || | | | |||||| || || ||||| | Sbjct 15590 GCGTTGTAGACCTTGGTGTTGCCAAGGGCCAACAGCAGGCGGTCAGCGACGAACTCGATG 15531 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCC 251711 ||||| | ||| || || |||||||| Sbjct 15530 TACTGGCACATGAGGGTGGAATTCATGCC 15502 >seq53 Length=59568 Score = 86.0 bits (94), Expect = 1e-11 Identities = 123/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 280657 TTGAGGACCA-TATGACCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATT 280715 |||||| ||| | || |||| | ||||| || | ||| || ||||||| ||||| Sbjct 34028 TTGAGGCCCACTGTGCCCAAT-TCGGTCTCGATGCTGAGCTTGTCTCTCACTCCCGCATG 34086 Query 280716 CGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACA 280774 || ||||| || || || ||| ||||| | || ||| || |||| ||||| | Sbjct 34087 CGTGGTCTGTCCGGTGGACAGCGTGTCAAGGTCGTTCTCGCCGCTTGCTCA-TGGCAGCG 34145 Query 280775 CCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 |||||| |||||||||||||||||||||| ||||| || ||||| || Sbjct 34146 TCCTCACTTGATCGTTCTCGACGAGCCTACTAACTACCTCGACCGTGA 34193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830597326111