Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq113 174 3e-38 seq6 147 4e-30 >seq113 Length=382967 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||||||||| ||||||| || | ||||| |||||||| || |||||||| || || | Sbjct 361739 TTCCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 361798 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | || || || | |||||| ||||| || || | | || ||||| || | Sbjct 361799 ACAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAG 361858 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||||||| |||||||| || ||||| ||||||| ||||| ||||| | ||| |||| Sbjct 361859 GAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATTGTGTCGGATGACTCTA 361918 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | |||||||| || || ||||| ||||||||||| |||||||| Sbjct 361919 CTTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || ||||| | |||||||| || || ||||| || || ||||| || ||||| Sbjct 361512 TCCTCCACGCAGGCGGAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 361571 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | ||||| || | |||||| || || || ||||| | || ||||| || || Sbjct 361572 GAGAGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGG 361631 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || ||||| || || ||||| | |||||| || ||||| || | ||| ||||| Sbjct 361632 GATACCCTCCTTATCCTGGATCTTCGATTTGACGTTGTCAATGGTATCGGATGACTCTAC 361691 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| | |||||||| ||||| ||||| ||||||||||| ||||||||| Sbjct 361692 TTCTAGCGTGATGGTCTTTCCAGTGAGCGTCTTGACGAAGATCTGCATT 361740 >seq6 Length=114070 Score = 147 bits (162), Expect = 4e-30 Identities = 313/461 (68%), Gaps = 10/461 (2%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| ||||||| | Sbjct 15687 CATGACACCAGCCTTCTGGTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGC 15628 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||| || ||| |||||||||||| |||||||| |||| | ||||| || || Sbjct 15627 GAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTGTTGCC 15568 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 || || | | ||||||||| ||||||||||||||||||| ||| ||| || || Sbjct 15567 AAGGGCCAACAGCAGGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTGGAATT 15508 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || |||||||| || ||| | ||| |||| || | | || || Sbjct 15507 CATGCCGAGCAGAGCGCAGGGGAGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAGC 15448 Query 10175 TTCCTCGACGATGCTCTTTAC--CA--CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 || || |||| ||| || || | | ||| | | |||| ||| || Sbjct 15447 CTCGGTGATGATGGCCTTGACGGCATCCTTGCTGGGGC-GGGTGTT---GAGAAGAGAGA 15392 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 | || || | |||| | ||| | ||||||||| ||| ||||| ||||||||| | Sbjct 15391 AGAGCAGGCATGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGA 15332 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCG 10349 | ||||| ||||| || || || || |||||||| |||| ||| ||| || ||| Sbjct 15331 AGGTAAGACCTGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGC-GAAAGAGCCG 15273 Query 10350 GAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCG 10390 ||| | | |||||| ||| | |||||||||| || Sbjct 15272 CTGAAGAAGATACCCTCAACGGCAGCAAAGGCGACGAGACG 15232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616973948120