Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 309 6e-79 seq465 300 3e-76 >seq6 Length=114070 Score = 309 bits (342), Expect = 6e-79 Identities = 388/520 (75%), Gaps = 17/520 (3%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 || |||||| |||||||| |||||||| ||||| |||||| || | || | | || Sbjct 15163 CCATGCATCCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCTC-AGACAAGAACTCCAC 15221 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | | | | || || |||||| | ||||| ||||| ||||||||| ||| | || Sbjct 15222 TTTTGCCAACCGTCTCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCTTT 15281 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 ||| |||||||||||||||||| || ||| | |||||| || || |||||||| |||| Sbjct 15282 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCT-GATGCCAGGTCTTACCTTCTCCAACG 15340 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | |||||| | | |||||||| |||| | |||||||| ||||| || ||||| | Sbjct 15341 AGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCATGCCTGCTCTTCTC---TC 15397 Query 42871 ACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 |||| ||| |||| | ||||| ||| |||||||||||| ||||| || ||| Sbjct 15398 TTCTCA-ACACCCGCCCCAGCAAGGATGCCGTCAAGGCCATCATCACCGAGGCTGTTGAG 15456 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA--CCACG 42987 || ||| ||||||||||||| | | || ||| | ||| |||||||||| |||| Sbjct 15457 ATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCTCTGCTCGGCATGAATTCCAC- 15515 Query 42988 ACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGT--GCCAGATGGGTCT 43045 |||||||||| |||||||| ||| |||||| |||| || |||| ||| | || Sbjct 15516 -CCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTGCTGTTGGCC--CTTGGCAA 15572 Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105 || | |||||||| | | |||||||||||| ||||||||||||||| | | ||| Sbjct 15573 CACCAAGGTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGCGGG 15632 Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||| |||||||||||||||| ||| |||||| Sbjct 15633 CAAGACCAACTTCTTCGAGAAGCGCGTCGGCGATTACCAG 15672 Score = 104 bits (114), Expect = 4e-17 Identities = 182/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 42301 TCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 ||||| |||||||||||||| | || | || ||||||||||||||||||||| ||| Sbjct 14778 TCTGGCAAATGTACAAGAAGGCCGAAGCT-TCTTTCTGGACCGCCGAGGAGATTGATCTG 14836 Query 42360 GCCAAGGACACGGCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAA 42416 ||||||| || |||| | | || || |||| || ||| || Sbjct 14837 TCCAAGGATCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCTCC 14896 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || ||||||||||||||||| || ||||| ||||| |||||||| | | | Sbjct 14897 CACGTTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTCGTCGAGCGC 14956 Query 42477 TTCATGAAAGAGGTGC-AGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||| | ||||| | | ||| ||||| || |||||||||||||||||||| || Sbjct 14957 TTCTCCAGCGAGGTTCAAATAC-CAGAGGCACGATGCTTCTACGGCTTCCAGATTATGAT 15015 Query 42536 AGAGAACGTGCACTCTGAG 42554 |||||| | ||||| ||| Sbjct 15016 GGAGAACATCCACTCAGAG 15034 >seq465 Length=132516 Score = 300 bits (332), Expect = 3e-76 Identities = 638/946 (67%), Gaps = 20/946 (2%) Strand=Plus/Plus Query 244676 AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATC 244735 ||||||| | ||||||||||| ||||| ||||| || | ||| ||| ||||||| Sbjct 113020 AGGGCGAGGGAAGCCAGGTTGCACACGGCGACCTCATCAGGAGCAGTGAACTCGACAATC 113079 Query 244736 TCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTG 244795 || ||||||||||| || ||||| || |||| || || |||||||| |||| Sbjct 113080 TCAGTGCAGAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGGACTTCCTGTTG 113139 Query 244796 CAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTG 244855 || ||||||||||| |||||||| || || ||||| ||| || |||| | | | Sbjct 113140 CAAGCGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCAGTCTGCGCCTCGAGAATGGCG 113199 Query 244856 TTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTG 244915 | |||||| | | || || ||| |||| ||||| ||| |||||| |||||| Sbjct 113200 TACCAGAGCTTCTGGGCACGAACAGTCTCGCGACCCTTGTTCTCGCGCTCGTAACGGGTG 113259 Query 244916 TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCAC 244975 || || |||||||||| ||| |||| ||| | || || |||||| |||||| Sbjct 113260 TAGAGCTCCTCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCAC 113319 Query 244976 ATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGG 245035 ||||| ||||||||||| || | || | || ||||||||| ||||| ||||||||| Sbjct 113320 ATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGG 113379 Query 245036 GCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAA 245095 || | ||||||||| | | | ||| ||| || |||||| | || || | Sbjct 113380 GCGTAGAAGAGGTCACGAGCTCGTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGG 113439 Query 245096 AAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTG 245155 ||| | || || || ||||||| ||||| | ||||| |||| || || || |||||| Sbjct 113440 AAGCCGAATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTG 113499 Query 245156 TTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCAC 245211 ||||| ||||| || | | | |||||| |||| ||| || || | || | Sbjct 113500 TTGCCACCCTGATCGA----CGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGAT 113555 Query 245212 TATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCT 245271 | || || || ||||||||||| ||||||| ||| || | | || ||| Sbjct 113556 GAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCAC---GGATGC- 113611 Query 245272 GATGGACAT----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327 | || |||| || | ||||| ||| ||||||||| | || || |||| | | Sbjct 113612 GGTGCACATTGAGTCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCAGTG 113671 Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387 |||| || || || ||||||||| |||||||| || || |||||||| |||| || Sbjct 113672 TGTCGTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCT 113731 Query 245388 GGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCG 245447 | || ||||| | | || ||||||||| || || ||| || || ||||| || Sbjct 113732 GAGGGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCG 113791 Query 245448 AGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGC 245507 | | | | |||| |||| | || |||| ||||| ||||| | |||| Sbjct 113792 ACATGTAGTCGTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATGCCAACGGCGA 113851 Query 245508 ACCTCATGAGGGTGTGCTG-GGGCG-TCTCGATGGGTCCCTCGGGTCCCTTGAGCATGTA 245565 | |||||| ||||||| ||||| ||| | | || | | | ||| | ||| Sbjct 113852 CACGCATGAGCATGTGCTGTGGGCGCTCTGCAACCTTGCCGTTGATGC--GGAGGAGGTA 113909 Query 245566 GGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 |||||||| ||||||||||| |||||| || |||| |||||| Sbjct 113910 TGAGCGCTCTAGCGTCTTGAAGCCAAAGAACTGGTAGTTGAAGTCG 113955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333640202960