Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq6 309 6e-79
seq465 300 3e-76
>seq6
Length=114070
Score = 309 bits (342), Expect = 6e-79
Identities = 388/520 (75%), Gaps = 17/520 (3%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691
|| |||||| |||||||| |||||||| ||||| |||||| || | || | | ||
Sbjct 15163 CCATGCATCCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCTC-AGACAAGAACTCCAC 15221
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|| | | | | || || |||||| | ||||| ||||| ||||||||| ||| | ||
Sbjct 15222 TTTTGCCAACCGTCTCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCTTT 15281
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810
||| |||||||||||||||||| || ||| | |||||| || || |||||||| ||||
Sbjct 15282 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCT-GATGCCAGGTCTTACCTTCTCCAACG 15340
Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870
| |||||| | | |||||||| |||| | |||||||| ||||| || ||||| |
Sbjct 15341 AGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCATGCCTGCTCTTCTC---TC 15397
Query 42871 ACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929
|||| ||| |||| | ||||| ||| |||||||||||| ||||| || |||
Sbjct 15398 TTCTCA-ACACCCGCCCCAGCAAGGATGCCGTCAAGGCCATCATCACCGAGGCTGTTGAG 15456
Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA--CCACG 42987
|| ||| ||||||||||||| | | || ||| | ||| |||||||||| ||||
Sbjct 15457 ATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCTCTGCTCGGCATGAATTCCAC- 15515
Query 42988 ACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGT--GCCAGATGGGTCT 43045
|||||||||| |||||||| ||| |||||| |||| || |||| ||| | ||
Sbjct 15516 -CCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTGCTGTTGGCC--CTTGGCAA 15572
Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105
|| | |||||||| | | |||||||||||| ||||||||||||||| | | |||
Sbjct 15573 CACCAAGGTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGCGGG 15632
Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|||||||||||| |||||||||||||||| ||| ||||||
Sbjct 15633 CAAGACCAACTTCTTCGAGAAGCGCGTCGGCGATTACCAG 15672
Score = 104 bits (114), Expect = 4e-17
Identities = 182/259 (70%), Gaps = 7/259 (3%)
Strand=Plus/Plus
Query 42301 TCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
||||| |||||||||||||| | || | || ||||||||||||||||||||| |||
Sbjct 14778 TCTGGCAAATGTACAAGAAGGCCGAAGCT-TCTTTCTGGACCGCCGAGGAGATTGATCTG 14836
Query 42360 GCCAAGGACACGGCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAA 42416
||||||| || |||| | | || || |||| || ||| ||
Sbjct 14837 TCCAAGGATCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCTCC 14896
Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476
|| | || ||||||||||||||||| || ||||| ||||| |||||||| | | |
Sbjct 14897 CACGTTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTCGTCGAGCGC 14956
Query 42477 TTCATGAAAGAGGTGC-AGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535
||| | ||||| | | ||| ||||| || |||||||||||||||||||| ||
Sbjct 14957 TTCTCCAGCGAGGTTCAAATAC-CAGAGGCACGATGCTTCTACGGCTTCCAGATTATGAT 15015
Query 42536 AGAGAACGTGCACTCTGAG 42554
|||||| | ||||| |||
Sbjct 15016 GGAGAACATCCACTCAGAG 15034
>seq465
Length=132516
Score = 300 bits (332), Expect = 3e-76
Identities = 638/946 (67%), Gaps = 20/946 (2%)
Strand=Plus/Plus
Query 244676 AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATC 244735
||||||| | ||||||||||| ||||| ||||| || | ||| ||| |||||||
Sbjct 113020 AGGGCGAGGGAAGCCAGGTTGCACACGGCGACCTCATCAGGAGCAGTGAACTCGACAATC 113079
Query 244736 TCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTG 244795
|| ||||||||||| || ||||| || |||| || || |||||||| ||||
Sbjct 113080 TCAGTGCAGAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGGACTTCCTGTTG 113139
Query 244796 CAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTG 244855
|| ||||||||||| |||||||| || || ||||| ||| || |||| | | |
Sbjct 113140 CAAGCGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCAGTCTGCGCCTCGAGAATGGCG 113199
Query 244856 TTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTG 244915
| |||||| | | || || ||| |||| ||||| ||| |||||| ||||||
Sbjct 113200 TACCAGAGCTTCTGGGCACGAACAGTCTCGCGACCCTTGTTCTCGCGCTCGTAACGGGTG 113259
Query 244916 TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCAC 244975
|| || |||||||||| ||| |||| ||| | || || |||||| ||||||
Sbjct 113260 TAGAGCTCCTCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCAC 113319
Query 244976 ATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGG 245035
||||| ||||||||||| || | || | || ||||||||| ||||| |||||||||
Sbjct 113320 ATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGG 113379
Query 245036 GCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAA 245095
|| | ||||||||| | | | ||| ||| || |||||| | || || |
Sbjct 113380 GCGTAGAAGAGGTCACGAGCTCGTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGG 113439
Query 245096 AAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTG 245155
||| | || || || ||||||| ||||| | ||||| |||| || || || ||||||
Sbjct 113440 AAGCCGAATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTG 113499
Query 245156 TTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCAC 245211
||||| ||||| || | | | |||||| |||| ||| || || | || |
Sbjct 113500 TTGCCACCCTGATCGA----CGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGAT 113555
Query 245212 TATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCT 245271
| || || || ||||||||||| ||||||| ||| || | | || |||
Sbjct 113556 GAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCAC---GGATGC- 113611
Query 245272 GATGGACAT----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327
| || |||| || | ||||| ||| ||||||||| | || || |||| | |
Sbjct 113612 GGTGCACATTGAGTCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCAGTG 113671
Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387
|||| || || || ||||||||| |||||||| || || |||||||| |||| ||
Sbjct 113672 TGTCGTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCT 113731
Query 245388 GGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCG 245447
| || ||||| | | || ||||||||| || || ||| || || ||||| ||
Sbjct 113732 GAGGGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCG 113791
Query 245448 AGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGC 245507
| | | | |||| |||| | || |||| ||||| ||||| | ||||
Sbjct 113792 ACATGTAGTCGTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATGCCAACGGCGA 113851
Query 245508 ACCTCATGAGGGTGTGCTG-GGGCG-TCTCGATGGGTCCCTCGGGTCCCTTGAGCATGTA 245565
| |||||| ||||||| ||||| ||| | | || | | | ||| | |||
Sbjct 113852 CACGCATGAGCATGTGCTGTGGGCGCTCTGCAACCTTGCCGTTGATGC--GGAGGAGGTA 113909
Query 245566 GGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611
|||||||| ||||||||||| |||||| || |||| ||||||
Sbjct 113910 TGAGCGCTCTAGCGTCTTGAAGCCAAAGAACTGGTAGTTGAAGTCG 113955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944333640202960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |