Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq113 140 8e-28
seq6 86.0 1e-11
>seq113
Length=382967
Score = 140 bits (154), Expect = 8e-28
Identities = 146/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||||| ||| ||||| || || || | || ||||| || |||
Sbjct 361549 TCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAAG 361608
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| || ||||| || || ||||||||||| |||| ||| |||||
Sbjct 361609 ATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGGATCTTCGATTTGACGTTG 361668
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | |||| || |||||||| |||||||| ||||| || || || |||||||||
Sbjct 361669 TCAATGGTATCGGATGACTCTACTTCTAGCGTGATGGTCTTTCCAGTGAGCGTCTTGACG 361728
Query 288463 AATATCTGCATT 288474
|| |||||||||
Sbjct 361729 AAGATCTGCATT 361740
Score = 127 bits (140), Expect = 5e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
||| ||||| || | || |||||||| | ||| || || ||||| || ||||| |
Sbjct 361740 TCCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 361799
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|||||||| ||||| || | || || || || ||||||| ||||| || ||
Sbjct 361800 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGG 361859
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTA 288424
|| || || || |||||||| || ||| || ||||| || || | ||| || ||||
Sbjct 361860 AATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATTGTGTCGGATGACTCTA 361918
Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||| |||||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 361919 CTTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967
>seq6
Length=114070
Score = 86.0 bits (94), Expect = 1e-11
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 269131 GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAA 269190
|| ||| |||| || || || |||| |||||| || |||||| || || |||||
Sbjct 15478 GAAGCTCTCCCCTGCGCTCTGCTCGGCATGAATTCCACCCTCATGTGCCAGTACATCGAG 15537
Query 269191 TTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAAT 269250
||||| ||||| || | | ||| || || | || || ||||| | | ||
Sbjct 15538 TTCGTCGCTGACCGCCTGCTGTTGGCCCTTGGCAACACCAAGGTCTACAACGCCACCAAC 15597
Query 269251 CCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGT 269310
||||||| ||| ||||| || ||||||| || ||||| ||||||||||| |||||
Sbjct 15598 CCCTTCGACTTCATGGAGAACATCTCGCTCGCGGGCAAGACCAACTTCTTCGAGAAGCGC 15657
Query 269311 GTCAGCGACTATCAACGTCCTGGTGTAATG 269340
||| |||| || || ||||||| |||
Sbjct 15658 GTCGGCGATTACCAGAAGGCTGGTGTCATG 15687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179647281154338
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |