Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq113 140 8e-28 seq6 86.0 1e-11 >seq113 Length=382967 Score = 140 bits (154), Expect = 8e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| ||| ||||| || || || | || ||||| || ||| Sbjct 361549 TCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAAG 361608 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||||| || || ||||||||||| |||| ||| ||||| Sbjct 361609 ATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGGATCTTCGATTTGACGTTG 361668 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| || |||||||| |||||||| ||||| || || || ||||||||| Sbjct 361669 TCAATGGTATCGGATGACTCTACTTCTAGCGTGATGGTCTTTCCAGTGAGCGTCTTGACG 361728 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 361729 AAGATCTGCATT 361740 Score = 127 bits (140), Expect = 5e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| || | || |||||||| | ||| || || ||||| || ||||| | Sbjct 361740 TCCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 361799 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| ||||| || | || || || || ||||||| ||||| || || Sbjct 361800 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGG 361859 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 || || || || |||||||| || ||| || ||||| || || | ||| || |||| Sbjct 361860 AATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATTGTGTCGGATGACTCTA 361918 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| |||||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 361919 CTTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967 >seq6 Length=114070 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 269131 GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAA 269190 || ||| |||| || || || |||| |||||| || |||||| || || ||||| Sbjct 15478 GAAGCTCTCCCCTGCGCTCTGCTCGGCATGAATTCCACCCTCATGTGCCAGTACATCGAG 15537 Query 269191 TTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAAT 269250 ||||| ||||| || | | ||| || || | || || ||||| | | || Sbjct 15538 TTCGTCGCTGACCGCCTGCTGTTGGCCCTTGGCAACACCAAGGTCTACAACGCCACCAAC 15597 Query 269251 CCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGT 269310 ||||||| ||| ||||| || ||||||| || ||||| ||||||||||| ||||| Sbjct 15598 CCCTTCGACTTCATGGAGAACATCTCGCTCGCGGGCAAGACCAACTTCTTCGAGAAGCGC 15657 Query 269311 GTCAGCGACTATCAACGTCCTGGTGTAATG 269340 ||| |||| || || ||||||| ||| Sbjct 15658 GTCGGCGATTACCAGAAGGCTGGTGTCATG 15687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179647281154338