Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 122 2e-22 >seq6 Length=114070 Score = 122 bits (134), Expect = 2e-22 Identities = 311/471 (66%), Gaps = 12/471 (3%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||| | ||||||||||||| | |||||| ||||| | || ||| |||| Sbjct 15223 TTTGCCAACCGTCTCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCTTTC 15282 Query 243349 TGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 243407 ||| ||||||| ||||| ||| ||| ||||||| || || | || ||||| Sbjct 15283 -GCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGTCTTACCTTCTCCAACGA 15341 Query 243408 GTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGG-----TGAGCTTATGTATTCA 243462 | ||||| || ||||||||| | ||| | || | || ||| | | ||| Sbjct 15342 GCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCATGCCTGCTCTTCTCTCTTCT 15401 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAA 243522 | | || | | ||| | || | ||||| |||||||| || || ||||| Sbjct 15402 CAACACCCGCCCCAGCAAGGATGCC-----GTCAAGGCCATCATCACCGAGGCTGTTGAG 15456 Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582 | || |||| ||| | ||| ||| | || ||| || | |||||||| || Sbjct 15457 ATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCTCTGCTCGGCATGAATTCCACC 15516 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| | ||||||||||| ||||| || |||||| | | | || ||||| | Sbjct 15517 CTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTGCTGTTGGCCCTTGGCAACACC 15576 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || || |||||| ||| |||||||| | ||| |||||| ||| ||||| || || Sbjct 15577 AAGGTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGCGGGCAAG 15636 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATG 243753 || ||||||||||| ||||| ||| | ||||| || ||||||| ||| Sbjct 15637 ACCAACTTCTTCGAGAAGCGCGTCGGCGATTACCAGAAGGCTGGTGTCATG 15687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873344463850