Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq6 122 2e-22
>seq6
Length=114070
Score = 122 bits (134), Expect = 2e-22
Identities = 311/471 (66%), Gaps = 12/471 (3%)
Strand=Plus/Plus
Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348
||||| | ||||||||||||| | |||||| ||||| | || ||| ||||
Sbjct 15223 TTTGCCAACCGTCTCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCTTTC 15282
Query 243349 TGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 243407
||| ||||||| ||||| ||| ||| ||||||| || || | || |||||
Sbjct 15283 -GCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGTCTTACCTTCTCCAACGA 15341
Query 243408 GTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGG-----TGAGCTTATGTATTCA 243462
| ||||| || ||||||||| | ||| | || | || ||| | | |||
Sbjct 15342 GCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCATGCCTGCTCTTCTCTCTTCT 15401
Query 243463 AAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAA 243522
| | || | | ||| | || | ||||| |||||||| || || |||||
Sbjct 15402 CAACACCCGCCCCAGCAAGGATGCC-----GTCAAGGCCATCATCACCGAGGCTGTTGAG 15456
Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582
| || |||| ||| | ||| ||| | || ||| || | |||||||| ||
Sbjct 15457 ATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCTCTGCTCGGCATGAATTCCACC 15516
Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642
|||||| | ||||||||||| ||||| || |||||| | | | || ||||| |
Sbjct 15517 CTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTGCTGTTGGCCCTTGGCAACACC 15576
Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702
|| || |||||| ||| |||||||| | ||| |||||| ||| ||||| || ||
Sbjct 15577 AAGGTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGCGGGCAAG 15636
Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATG 243753
|| ||||||||||| ||||| ||| | ||||| || ||||||| |||
Sbjct 15637 ACCAACTTCTTCGAGAAGCGCGTCGGCGATTACCAGAAGGCTGGTGTCATG 15687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102873344463850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |