Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq113 114 1e-20 >seq113 Length=382967 Score = 114 bits (126), Expect = 1e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| || |||||| ||||| ||||| || | ||||| || | || || Sbjct 361530 CACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGGCCATCCTC 361589 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| ||||| || ||||| ||||||||||| | || | | |||||| ||| Sbjct 361590 CAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTG 361649 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || ||||| ||| | | | || ||| || || || || | ||||||||| | Sbjct 361650 GATCTTCGATTTGA-CGTTGTCAATGGTATCGGATGACTCTACTTCTAGCGTGATGGTCT 361708 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || || |||||||| || ||||| |||||| Sbjct 361709 TTCCAGTGAGCGTCTTGACGAAGATCTGCATT 361740 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||| | ||| | ||| |||||| || || ||||| || | ||| || || || Sbjct 361753 CGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCG 361812 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || || || || | ||||||||||| | || | || ||||||| Sbjct 361813 TCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTG 361872 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || |||| ||| | | | |||||| || || || || | |||||| Sbjct 361873 TCCTGGATCTTGCTCTTGA-CGTTGTCGATTGTGTCGGATGACTCTACTTCAAGCGTGAT 361931 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || |||||||| || ||||| ||||| Sbjct 361932 GGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209601834640