Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq113 114 1e-20
>seq113
Length=382967
Score = 114 bits (126), Expect = 1e-20
Identities = 154/212 (73%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||| |||| || |||||| ||||| ||||| || | ||||| || | || ||
Sbjct 361530 CACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGGCCATCCTC 361589
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||| ||||| || ||||| ||||||||||| | || | | |||||| |||
Sbjct 361590 CAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTG 361649
Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177
||| || ||||| ||| | | | || ||| || || || || | ||||||||| |
Sbjct 361650 GATCTTCGATTTGA-CGTTGTCAATGGTATCGGATGACTCTACTTCTAGCGTGATGGTCT 361708
Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
| || || |||||||| || ||||| ||||||
Sbjct 361709 TTCCAGTGAGCGTCTTGACGAAGATCTGCATT 361740
Score = 113 bits (124), Expect = 5e-20
Identities = 156/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| ||| | ||| | ||| |||||| || || ||||| || | ||| || || ||
Sbjct 361753 CGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCG 361812
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| || || || || | ||||||||||| | || | || |||||||
Sbjct 361813 TCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTG 361872
Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
||| ||| || |||| ||| | | | |||||| || || || || | ||||||
Sbjct 361873 TCCTGGATCTTGCTCTTGA-CGTTGTCGATTGTGTCGGATGACTCTACTTCAAGCGTGAT 361931
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| ||||| || |||||||| || ||||| |||||
Sbjct 361932 GGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543209601834640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |