Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq113 113 5e-20
seq267 87.8 2e-12
>seq113
Length=382967
Score = 113 bits (124), Expect = 5e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||||| | ||||| ||||| | || || || || || |||||||| || |
Sbjct 361741 CCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 361800
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| |||| |||||||||||||||||| | || | ||||||||||| ||||||
Sbjct 361801 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGA 361860
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| || || || || || || || ||| || || | ||| || | || |||
Sbjct 361861 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATTGTGTCGGATGACTCTACT 361920
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | |||||||||||| | || || ||||| || |||||
Sbjct 361921 TCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| || || ||||||||||| || | || ||||| | || || |||||||| ||
Sbjct 361543 GTCGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCCAGCTGCTTTCCA 361602
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | ||||| ||||||||||| ||||| || || || || || || || || ||
Sbjct 361603 GCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGGATCTTCGATTTG 361662
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| || | ||||| | || ||||||| || | |||||| || || | ||
Sbjct 361663 ACGTTGTCAATGGTATCGGATGACTCTACTTCTAGCGTGATGGTCTTTCCAGTGAGCGTC 361722
Query 64427 TTTACGAAAATTTGCATT 64444
|| ||||| || ||||||
Sbjct 361723 TTGACGAAGATCTGCATT 361740
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | || || || || | |||||| || || || |||||||| || |
Sbjct 361968 ACCACCGCGGAGACGGAGGACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 362027
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| |||| |||||||| |||||||| | || | ||||||||||| || ||
Sbjct 362028 AAGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGG 362087
Query 64336 AATTCCTTCTTTTTCT 64351
||| || || || |||
Sbjct 362088 AATGCCCTCCTTGTCT 362103
>seq267
Length=290730
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | ||||||||||| | || || || || || |||||||| || |
Sbjct 207169 ACCACCACGCAGGCGGAGCACTAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 207228
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| | || || |||||||||||||| | ||||| ||||||||||| || ||
Sbjct 207229 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 207288
Query 64336 AATTCCTTCTTTTTCT 64351
||| || || || |||
Sbjct 207289 AATGCCCTCCTTGTCT 207304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499641858341240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |