Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq465 306 4e-78 >seq465 Length=132516 Score = 306 bits (338), Expect = 4e-78 Identities = 639/939 (68%), Gaps = 11/939 (1%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | | ||||| |||||| || || ||| || ||||||||| || | ||| Sbjct 113948 AACTACCAGTTCTTTGGCTTCAAGACGCTAGAGCGCTCATACCTCCTCCGCATCAACGGC 113889 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | |||| | ||||| || || || |||| ||||| |||||| | || || || ||| | Sbjct 113888 AAGGTTGCAGAGCGCCCACAGCACATGCTCATGCGTGTCGCCGTTGGCATCCATGGCGAA 113829 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGC 93893 ||||| ||| | | | | | | ||||| | | ||| | || |||| | Sbjct 113828 GACATTGAGAAGGCCATTGAGACCTACGACTACATGTCGCAAAAGTACTTCACACATG-C 113770 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | | || || |||||||||||||| || || || |||||||| || || ||||| || Sbjct 113769 CTCGCCTACGCTGTTCAACGCGGGAACGCCCAACCCTCAGATGTCATCCTGCTTCCTCAT 113710 Query 93954 -GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCA 94012 ||| | |||| ||| |||| ||| || | ||||| || ||| |||||| | Sbjct 113709 CGAC-ATGAAGGAGGACAGCATCGACGGTATCTACGACACACTGAAGACGTGTGCGTTGA 113651 Query 94013 TCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCT 94072 |||| || ||| || || || || ||| ||| ||| | | ||||||| || |||| Sbjct 113650 TCTCCAAGACCGCTGGCGGCATTGGACTCAATGTGCACCGCATCCGTGCCACCGGCTCCT 113591 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 |||| | || ||||| || || ||||| || ||| |||| |||||||| |||| ||||| Sbjct 113590 ACATTGGTGGCACCAACGGAACATCCAATGGTCTCATCCCGATGCTCCGTGTCTACAACA 113531 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || | || |||||||| || |||||||| | | | ||| ||||||| |||| | Sbjct 113530 ACACCGCTCGCTACGTCGATCAGGGTGGCAACAAGCGCCCTGGTGCTTTCGCCATCTACC 113471 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 ||||||| ||||||||||| || | ||| | ||||| || ||||||||||| || | Sbjct 113470 TCGAGCCATGGCACGCGGATGTATTCGGCTTCCTTGACCTACGCAAGAACCACGGTAAGG 113411 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | || | || | |||||||||||||| |||||| | || || || || ||||| | Sbjct 113410 AAGAGGTACGAGCTCGTGACCTCTTCTACGCCCTCTGGATTCCCGATCTCTTCATGAAGC 113351 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | || | | ||| || |||| || | || ||||| || || || || || ||| Sbjct 113350 GAGTGCAAGAGAACGGCGAGTGGACACTCATGTGCCCCAACGAGTGCCCTGGTCTTGCCG 113291 Query 94373 ACGTTT--GTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAGG 94429 |||| | | ||| | | || || || | || | ||||||| | ||| || ||||| Sbjct 113290 ACGTCTACGGCGAT-GAG-TTCGAGGAGCTCTACACCCGTTACG-AGCGCGAGAACAAGG 113234 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | || | | ||| |||||| ||| | || | || | ||| |||| Sbjct 113233 GTCGCGAGACTGTTCGTGCCCAGAAGCTCTGGTACGCCATTCTCGAGGCGCAGACTGAGA 113174 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 | || | || | ||| ||| ||||||| || |||| |||||||||||| || ||| Sbjct 113173 CTGGCAACCCGTTCATGCTGTACAAGGACGCTTGCAACAGGAAGTCCAACCAGAAGAACC 113114 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 |||| || ||||| || || ||||| ||||||||||||| ||| |||| || | Sbjct 113113 TCGGTACCATTCGCAGCTCCAACCTCTGCACTGAGATTGTCGAGTTCACTGCTCCTGATG 113054 Query 94610 AGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCA 94648 || | || ||||| ||||||| ||| || ||| |||| Sbjct 113053 AGGTCGCCGTGTGCAACCTGGCTTCCCTCGCCCT-TCCA 113016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720287317160